hetio / hetmatpyLinks
Python package for matrix storage and operations on hetnets
☆15Updated 2 years ago
Alternatives and similar repositories for hetmatpy
Users that are interested in hetmatpy are comparing it to the libraries listed below
Sorting:
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 5 years ago
- jinja2-enabled jupyter notebooks☆37Updated last week
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 3 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆99Updated last month
- 🪝 What's the latest version for each database?☆27Updated last week
- 👜 Easily pick a place to store data for your Python code.☆39Updated this week
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 7 years ago
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆15Updated 7 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated last year
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 4 months ago
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆16Updated last year
- A project to capture biological pathway data from academic papers☆29Updated 6 months ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 9 years ago
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving feedback during peer review.☆26Updated 4 months ago
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆137Updated last year
- Network representation learning on drug-target-side effects-indication graphs for side effect prediction☆13Updated 5 years ago
- Network-based Drug Repurposing for Human Coronavirus☆40Updated 5 years ago
- Bayesian Factorization with Side Information in C++ with Python wrapper☆41Updated 3 years ago
- Neural networks for amino acid sequences☆21Updated 7 years ago
- Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work☆11Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 2 months ago
- protein embedding project☆12Updated 7 years ago
- Method for drug repurposing from knowledge graphs and literature☆35Updated 5 years ago
- Processing SIDER 4.1: the side effect resource☆23Updated 9 years ago
- A high-quality hand-curated logD7.4 dataset of 1,130 compounds☆20Updated 7 years ago
- code for Gogleva et al manuscript☆46Updated 2 years ago
- NetworkX-based Python library for representing ontologies☆90Updated 2 years ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago