hetio / hetmatpyLinks
Python package for matrix storage and operations on hetnets
☆14Updated 2 years ago
Alternatives and similar repositories for hetmatpy
Users that are interested in hetmatpy are comparing it to the libraries listed below
Sorting:
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 6 years ago
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)☆30Updated 8 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 7 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆102Updated 5 months ago
- Chemical Information Ontology☆21Updated 3 weeks ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 3 years ago
- jinja2-enabled jupyter notebooks☆37Updated last week
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆26Updated 9 years ago
- Network representation learning on drug-target-side effects-indication graphs for side effect prediction☆13Updated 6 years ago
- 🪝 What's the latest version for each database?☆28Updated this week
- PyBioPAX: A python implementation of the BioPAX object model☆26Updated last year
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆16Updated last year
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆17Updated 7 years ago
- 👜 Easily pick a place to store data for your Python code.☆42Updated this week
- Code to build the Target Central Resource Database (TCRD).☆11Updated 4 years ago
- Method for drug repurposing from knowledge graphs and literature☆36Updated 5 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated 2 weeks ago
- Code to accompany my blog post "Dissecting the Hype With Cheminformatics"☆12Updated 6 years ago
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆136Updated last year
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆67Updated 3 months ago
- Modeling and Bayesian analysis of fluorescence and absorbance assays.☆20Updated 4 years ago
- code for Gogleva et al manuscript☆46Updated 3 years ago
- Virtual machine with all software and sample data to run 3D-e-Chem Knime workflows☆17Updated 7 years ago
- Processing SIDER 4.1: the side effect resource☆23Updated 10 years ago
- ☆11Updated 7 years ago
- Container-based installation of pymol, with interaction through the browser via Jupyter notebook☆20Updated 6 years ago
- Grounding of biomedical named entities with contextual disambiguation☆47Updated last month
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Updated 5 years ago