hetio / hetmatpyLinks
Python package for matrix storage and operations on hetnets
☆15Updated 2 years ago
Alternatives and similar repositories for hetmatpy
Users that are interested in hetmatpy are comparing it to the libraries listed below
Sorting:
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 6 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 3 years ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 7 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆99Updated last month
- A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.☆16Updated last year
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- 👜 Easily pick a place to store data for your Python code.☆39Updated 3 weeks ago
- 👁️🗨️ Scientists often do the same bad stuff. Automate giving feedback during peer review.☆27Updated 5 months ago
- A project to capture biological pathway data from academic papers☆29Updated 7 months ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆17Updated 7 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 3 months ago
- jinja2-enabled jupyter notebooks☆37Updated 2 weeks ago
- code for Gogleva et al manuscript☆46Updated 2 years ago
- Code to build the Target Central Resource Database (TCRD).☆11Updated 4 years ago
- Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines o…☆26Updated 5 years ago
- Method for drug repurposing from knowledge graphs and literature☆35Updated 5 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 5 months ago
- 🪝 What's the latest version for each database?☆27Updated last week
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 9 years ago
- 🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)☆137Updated last year
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 3 years ago
- Tools for building and manipulating graphs in Python☆43Updated this week
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated last week
- Chemical Information Ontology☆19Updated 8 months ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Updated 11 months ago
- Network representation learning on drug-target-side effects-indication graphs for side effect prediction☆13Updated 5 years ago
- OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.☆100Updated last year