A Knowledge Graph for Relational Learning On Biological Data
☆109Mar 21, 2024Updated 2 years ago
Alternatives and similar repositories for biokg
Users that are interested in biokg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆59Nov 15, 2020Updated 5 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆158May 3, 2024Updated last year
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Jan 8, 2026Updated 3 months ago
- A knowledge graph and a set of tools for drug repurposing☆680Apr 19, 2022Updated 4 years ago
- Hetionet: an integrative network of disease☆351Apr 3, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆72Apr 13, 2026Updated last week
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆589Sep 11, 2025Updated 7 months ago
- Using pretrained language models for biomedical knowledge graph completion.☆47Oct 7, 2021Updated 4 years ago
- Source code for TKDE'22 "KG-MTL: Knowledge Graph Enhanced Multi-Task Learning for Molecular Interaction"☆28Jul 9, 2022Updated 3 years ago
- Precision Medicine Knowledge Graph (PrimeKG)☆732May 27, 2024Updated last year
- AI-augmented R-group exploration in medicinal chemistry☆20Sep 25, 2024Updated last year
- ☆14Mar 6, 2024Updated 2 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Jan 25, 2024Updated 2 years ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆251May 26, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- "MUFFIN: Multi-Scale Feature Fusion for Drug–Drug Interaction Prediction".☆13Mar 29, 2022Updated 4 years ago
- ☆32Jun 17, 2021Updated 4 years ago
- ☆10Nov 17, 2020Updated 5 years ago
- Library of Integrated Cellular Signatures L1000☆30Apr 21, 2022Updated 3 years ago
- code for Gogleva et al manuscript☆46Nov 30, 2022Updated 3 years ago
- A Network Integration Approach for Drug-Target Interaction Prediction☆188Oct 30, 2022Updated 3 years ago
- The official code implementation for DREAMwalk in Python.☆30Jul 28, 2023Updated 2 years ago
- TypeDB Bio: Biomedical Knowledge Graph☆88Jun 2, 2025Updated 10 months ago
- 🤖 A Python library for learning and evaluating knowledge graph embeddings☆1,979Dec 17, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label…☆155Jun 30, 2022Updated 3 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆103Sep 4, 2025Updated 7 months ago
- ☆82Aug 2, 2024Updated last year
- Interpretable feature construction from taxonomies for text classification☆18Apr 4, 2022Updated 4 years ago
- Ontology cross-reference and mapping service☆20Dec 12, 2025Updated 4 months ago
- NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Intera…☆11Oct 12, 2021Updated 4 years ago
- A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)☆1,151Jun 10, 2024Updated last year
- ☆16Sep 5, 2023Updated 2 years ago
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆265May 6, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Project page:☆11Jul 19, 2020Updated 5 years ago
- Codes, datasets and appendix for AAAI-2023 paper "Multi-relational Contrastive Learning Graph Neural Network for Drug-drug Interaction Ev…☆20Feb 24, 2025Updated last year
- A unifying framework for biomedical research knowledge graphs☆299Apr 3, 2026Updated 2 weeks ago
- MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)☆229Jul 15, 2022Updated 3 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Mar 16, 2026Updated last month
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Feb 11, 2026Updated 2 months ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Apr 9, 2024Updated 2 years ago