Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
☆42Feb 26, 2026Updated this week
Alternatives and similar repositories for RTX
Users that are interested in RTX are comparing it to the libraries listed below
Sorting:
- ☆10Apr 23, 2025Updated 10 months ago
- NCATS Biomedical Translator Reasoners Standard API☆40Feb 19, 2026Updated last week
- This repo hosts the API metadata for the Translator project☆14Feb 2, 2026Updated last month
- Schema and generated objects for biolink data model and upper ontology☆224Feb 25, 2026Updated last week
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 2 years ago
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆103Sep 4, 2025Updated 5 months ago
- ☆70May 31, 2022Updated 3 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆56Updated this week
- ☆24Sep 3, 2024Updated last year
- Ensembl beta client☆15Updated this week
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Nov 2, 2021Updated 4 years ago
- THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build☆17Feb 5, 2021Updated 5 years ago
- ☆24Aug 29, 2025Updated 6 months ago
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 4 years ago
- NeoInterface - Neo4j made easy for Python programmers!☆25Mar 20, 2024Updated last year
- Refining the impact of genetic evidence on clinical success☆27Jul 14, 2024Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Nov 3, 2021Updated 4 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆32Aug 4, 2022Updated 3 years ago
- Examples on using EpiGraphDB☆29Mar 22, 2021Updated 4 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Dec 19, 2019Updated 6 years ago
- a module to calculate the MeSH similarity☆26Apr 13, 2021Updated 4 years ago
- My computational biology course as it evolves in real time☆14Aug 31, 2021Updated 4 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Mar 19, 2024Updated last year
- KGARevion: AI Agent for Knowledge-Intensive Biomedical QA☆44Mar 4, 2025Updated 11 months ago
- Ontology Tutorial☆73Nov 22, 2022Updated 3 years ago
- A template to create your own literature survey engine☆11Feb 23, 2026Updated last week
- Tools for text processing of structured product labels☆12Mar 27, 2020Updated 5 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Bayesian No-Effect-Concentration estimation in R☆14Dec 19, 2025Updated 2 months ago
- Graph of health and pharm data.☆33Oct 15, 2016Updated 9 years ago
- Introduction to statistics using R and Rstudio☆10Mar 18, 2021Updated 4 years ago
- Rhetorical sentence classification using LLMs☆11Oct 26, 2025Updated 4 months ago
- a module to calculate the MeSH similarity☆27Dec 2, 2021Updated 4 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Mar 15, 2023Updated 2 years ago
- A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of…☆248May 26, 2025Updated 9 months ago
- ggtikz: Add TikZ annotations with absolute data or relative plot coordinates to ggplots☆11Nov 6, 2025Updated 3 months ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- Claude Code Skill: Browse, summarize and capture AI-related YouTube videos☆40Jan 15, 2026Updated last month