RTXteam / RTX

Related projects ⓘ

Alternatives and complementary repositories for RTX

• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆50Updated this week
• mapping-commons / mh_mapping_initiative
  Repo to organise the mouse-human phenotype mapping initiative and reconcile resources.
  ☆13Updated 7 months ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated 7 months ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆56Updated this week
• OntoGene / OGER
  ☆23Updated 3 years ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆76Updated last week
• monarch-initiative / phenomics-assistant
  LLM retrieval augmented generation agent for the Monarch Knowledge graph.
  ☆19Updated this week
• phenopackets / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆78Updated last month
• CLO-ontology / CLO
  Communitiy-based Cell Line Ontology
  ☆18Updated 4 months ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆20Updated last month
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 3 months ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆26Updated this week
• biolink / ontobio
  python library for working with ontologies and ontology associations
  ☆123Updated this week
• callahantiff / PheKnowLator
  PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
  ☆167Updated 6 months ago
• related-sciences / nxontology
  NetworkX-based Python library for representing ontologies
  ☆82Updated last year
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆31Updated 7 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆13Updated last year
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆61Updated this week
• NCATSTranslator / ReasonerAPI
  NCATS Biomedical Translator Reasoners Standard API
  ☆35Updated last month
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆39Updated last week
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated 5 months ago
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆19Updated 5 years ago
• monarch-initiative / dipper
  Data Ingestion Pipeline for Monarch
  ☆57Updated last year
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆64Updated 2 years ago
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆12Updated this week
• ncats / stitcher
  A stitching platform for InXight
  ☆16Updated 2 weeks ago
• OBOFoundry / purl.obolibrary.org
  A system for managing OBO PURLs
  ☆77Updated this week
• obi-ontology / obi
  The Ontology for Biomedical Investigations
  ☆75Updated this week
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆23Updated 2 months ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago