A database of paths that represent the mechanism of action from a drug to a disease in an indication.
☆79Jun 3, 2026Updated 4 months ago
Alternatives and similar repositories for DrugMechDB
Users that are interested in DrugMechDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆66Oct 19, 2026Updated last week
- Parse the Drugs@FDA data into a postgres DB☆11Dec 8, 2022Updated 3 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Aug 7, 2026Updated 2 months ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆207May 3, 2024Updated 2 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆34Mar 19, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆16Jun 14, 2024Updated 2 years ago
- The Clinical Trials Knowledge Graph☆69Mar 9, 2023Updated 3 years ago
- Source code and data files for manuscript titled "Pharmaceutical patent landscaping: A novel approach to understand patents from the drug…☆15Nov 27, 2023Updated 2 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆62Mar 4, 2026Updated 7 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- A web application for exploring, analyzing, and curating pathway databases☆13Aug 12, 2023Updated 3 years ago
- ☆26Jan 14, 2021Updated 5 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆103Sep 4, 2025Updated last year
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆164May 3, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Sep 22, 2026Updated last month
- INDRA Context Graph Extension☆16Sep 29, 2026Updated last month
- Python package for matrix storage and operations on hetnets☆14Mar 30, 2023Updated 3 years ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆17Sep 28, 2026Updated last month
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Jan 25, 2024Updated 2 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆111Mar 21, 2024Updated 2 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Mar 30, 2022Updated 4 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆28Jul 1, 2024Updated 2 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 👜 Easily pick a place to store data for your Python code.☆43Oct 17, 2026Updated last week
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆28Aug 21, 2024Updated 2 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Jan 26, 2018Updated 8 years ago
- Grounding of biomedical named entities with contextual disambiguation☆56Jun 29, 2026Updated 4 months ago
- ☆14Mar 4, 2024Updated 2 years ago
- Cloud-based Drug Binding Structure Prediction☆52Aug 27, 2026Updated 2 months ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated 2 years ago
- Downloader, preprocessor, parser and deduper for NIH and NSF grants☆22Aug 24, 2018Updated 8 years ago
- 📮 An integrative registry of biological databases, ontologies, and nomenclatures.☆153Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A project that uses Langchain to construct SPARQL queries against SPARQL endpoints☆13Jun 14, 2024Updated 2 years ago
- python library for working with ontologies and ontology associations☆133Feb 11, 2025Updated last year
- Similarity search in heterogeneous knowledge graphs using meta paths.☆31Mar 11, 2023Updated 3 years ago
- code for Gogleva et al manuscript☆47Nov 30, 2022Updated 3 years ago
- Collection of scripts / notebooks to reliably select datasets☆31Jan 28, 2024Updated 2 years ago
- builds the PubChem Bioassay database that is distributed for use with bioassayR☆11Dec 4, 2021Updated 4 years ago
- Computational Analysis of Novel Drug Opportunities☆43Jul 23, 2026Updated 3 months ago