A database of paths that represent the mechanism of action from a drug to a disease in an indication.
โ69Nov 7, 2025Updated 3 months ago
Alternatives and similar repositories for DrugMechDB
Users that are interested in DrugMechDB are comparing it to the libraries listed below
Sorting:
- โ14Jun 14, 2024Updated last year
- ๐บ๏ธ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaโฆโ61Feb 16, 2026Updated last week
- PlaNet: Predicting population response to drugs via clinical knowledge graphโ33Mar 13, 2025Updated 11 months ago
- โ15Jun 21, 2022Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguationโ49Feb 13, 2026Updated 2 weeks ago
- Python library (C++ backend) for degree-preserving network randomizationโ14Oct 14, 2019Updated 6 years ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"โ16Jan 27, 2025Updated last year
- A high-quality hand-curated logD7.4 dataset of 1,130 compoundsโ22Nov 23, 2017Updated 8 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.โ30Mar 11, 2023Updated 2 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,โฆโ29Feb 6, 2026Updated 3 weeks ago
- Ten quick tips to finish that manuscript that's 90% complete.โ13Mar 30, 2022Updated 3 years ago
- Python package for matrix storage and operations on hetnetsโ14Mar 30, 2023Updated 2 years ago
- โ12Oct 9, 2024Updated last year
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Modelsโ200May 3, 2024Updated last year
- Hetnets in Python (relocated from dhimmel/hetio)โ103Sep 4, 2025Updated 5 months ago
- โ58Nov 15, 2020Updated 5 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usiโฆโ12Jan 25, 2024Updated 2 years ago
- A Knowledge Graph for Relational Learning On Biological Dataโ109Mar 21, 2024Updated last year
- ๐ช What's the latest version for each database?โ28Updated this week
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)โ56Feb 21, 2026Updated last week
- A stitching platform for InXightโ15Mar 28, 2025Updated 11 months ago
- PyBioPAX: A python implementation of the BioPAX object modelโ26May 10, 2024Updated last year
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical dataโ39Jul 31, 2025Updated 6 months ago
- Subpocket-based fingerprint for kinase pocket comparisonโ33Sep 24, 2023Updated 2 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.โ158May 3, 2024Updated last year
- ๐ฎ An integrative registry of biological databases, ontologies, and nomenclatures.โ140Updated this week
- python library for working with ontologies and ontology associationsโ133Feb 11, 2025Updated last year
- โ17Mar 5, 2023Updated 2 years ago
- A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their ownโฆโ18Feb 13, 2026Updated 2 weeks ago
- ๐ธ Idiomatic conversion between URIs and compact URIs (CURIEs) in Pythonโ25Jan 14, 2026Updated last month
- KDS software for Kinase Drug Selectivityโ11Jun 8, 2023Updated 2 years ago
- ๐ Easily pick a place to store data for your Python code.โ42Feb 19, 2026Updated last week
- Data Ingestion Pipeline for Monarchโ57Nov 23, 2022Updated 3 years ago
- A collection of useful python functions for looking up information and working with the Biolink Modelโ24Feb 3, 2026Updated 3 weeks ago
- An experimental ontology containing key terms from Open Biological and Biomedical Ontologies (OBO)โ46Jan 26, 2026Updated last month
- The Clinical Trials Knowledge Graphโ66Mar 9, 2023Updated 2 years ago
- KGX is a Python library for exchanging Knowledge Graphsโ139Feb 5, 2026Updated 3 weeks ago
- ๐ช A cookiecutter package for an enlightened python packageโ41Updated this week
- a tool for mapping free-text descriptions of entities to ontology termsโ24Jul 30, 2024Updated last year