biomedicalinformaticsgroup / cadmusLinks
A full-text article retrieval pipeline for biomedical literature.
☆22Updated 2 months ago
Alternatives and similar repositories for cadmus
Users that are interested in cadmus are comparing it to the libraries listed below
Sorting:
- PhenoTagger☆64Updated 2 years ago
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆29Updated 4 years ago
- ☆24Updated 2 years ago
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆200Updated last year
- Data structures and code to read/write BioC XML and Json.☆33Updated 2 years ago
- ☆24Updated 5 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆58Updated last week
- A combined deep learning tool for automated recognition of human phenotype ontology☆27Updated 3 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆201Updated last year
- Python library for working with BioC files☆13Updated 7 years ago
- AIONER☆62Updated last year
- Tool that converts between BioC XML files and BioC JSON files☆18Updated 9 years ago
- Grounding of biomedical named entities with contextual disambiguation☆47Updated 3 weeks ago
- Phenotype-based Diagnosis Tool for Rare Diseases☆12Updated 9 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆83Updated 2 weeks ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated this week
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆53Updated last month
- ☆29Updated 2 years ago
- Ontology for the description of human clinical features☆331Updated 2 weeks ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆30Updated last week
- ☆32Updated 2 years ago
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 10 months ago
- a module to calculate the MeSH similarity☆27Updated 4 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆75Updated last week
- Batch download articles based on PMID (Pubmed ID)☆133Updated 2 years ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆141Updated 5 months ago
- Repository for student projects within biomedical text mining from Lund University☆57Updated 2 years ago