A full-text article retrieval pipeline for biomedical literature.
☆23Nov 24, 2025Updated 5 months ago
Alternatives and similar repositories for cadmus
Users that are interested in cadmus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardise text and table data…☆23May 11, 2026Updated last week
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- Message Passing Neural Networks for Molecule Property Prediction☆12Jan 17, 2020Updated 6 years ago
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated last year
- A collection of useful python functions for looking up information and working with the Biolink Model☆24May 11, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Mar 4, 2024Updated 2 years ago
- ☆24Mar 1, 2023Updated 3 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆37Sep 26, 2020Updated 5 years ago
- The sars R package☆10Jan 6, 2026Updated 4 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆33Mar 19, 2024Updated 2 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Jan 26, 2018Updated 8 years ago
- ☆12Dec 28, 2021Updated 4 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Aug 8, 2022Updated 3 years ago
- 🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.☆40Sep 29, 2025Updated 7 months ago
- Django backend to varapp☆20Feb 9, 2017Updated 9 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆44Jan 8, 2026Updated 4 months ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 4 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variab…☆15Sep 28, 2021Updated 4 years ago
- Converts Brat formatted annotations to CoNLL format for Named entity recognition☆20Sep 5, 2023Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆28May 12, 2026Updated last week
- a customzable pipeline for information extraction☆18Mar 23, 2026Updated last month
- Ontology for representing scientific evidence and provenance information☆53Oct 2, 2025Updated 7 months ago
- R package for proximity-based methods of link prediction.☆12Aug 11, 2025Updated 9 months ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Oct 12, 2023Updated 2 years ago
- Biomedical Entity Linking Benchmark☆13Dec 10, 2024Updated last year
- LA-PDFText is a system for extracting accurate text from PDF-based research articles (and an interface to be able to improve performance …☆15Mar 21, 2019Updated 7 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆103Sep 4, 2025Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.☆19Feb 2, 2026Updated 3 months ago
- Network Embedding All the Things☆19Oct 4, 2022Updated 3 years ago
- Network annotation visualization☆18May 21, 2025Updated 11 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- Semantic prefix map registry☆14May 9, 2026Updated last week
- ☆11May 25, 2024Updated last year
- Research into identifying and correcting incorrect labels in the CoNLL-2003 corpus.☆12May 11, 2021Updated 5 years ago