biomedicalinformaticsgroup / cadmusLinks
A full-text article retrieval pipeline for biomedical literature.
☆21Updated 3 months ago
Alternatives and similar repositories for cadmus
Users that are interested in cadmus are comparing it to the libraries listed below
Sorting:
- PhenoTagger☆57Updated last year
- ☆24Updated 4 years ago
- RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion☆28Updated 3 years ago
- ☆22Updated 2 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆55Updated this week
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- AIONER☆55Updated 11 months ago
- Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardize text and table data…☆21Updated last week
- Grounding of biomedical named entities with contextual disambiguation☆44Updated last month
- A combined deep learning tool for automated recognition of human phenotype ontology☆24Updated 2 years ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆49Updated 6 months ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- ☆26Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆24Updated 10 months ago
- A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology☆29Updated 3 months ago
- ☆23Updated 7 months ago
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆79Updated 3 weeks ago
- ☆67Updated 3 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Biomedical Term Annotator☆9Updated 4 months ago
- Biomedical Entity Linking Benchmark☆13Updated 6 months ago
- ☆17Updated 4 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- ☆19Updated 2 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆69Updated last week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆192Updated last year
- Retrieve and process PubTator annotations☆44Updated last year
- 🪝 What's the latest version for each database?☆27Updated this week
- Simulate patients with rare genetic conditions☆22Updated last year
- Build PharMeBINet from different sources.☆17Updated 3 months ago