Alternatives and similar repositories for cadmus

Users that are interested in cadmus are comparing it to the libraries listed below

• ncbi-nlp / PhenoTagger
  PhenoTagger
  ☆56Updated last year
• OntoGene / OGER
  ☆24Updated 4 years ago
• larsjuhljensen / tagger
  ☆22Updated 2 years ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆54Updated last month
• sujunhao / RENET2
  RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion
  ☆28Updated 3 years ago
• omicsNLP / Auto-CORPus
  Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardize text and table data…
  ☆21Updated this week
• anergictcell / pyhpo
  A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
  ☆27Updated 2 months ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆49Updated 6 months ago
• Knowledge-Graph-Hub / kg-obo
  A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
  ☆32Updated last year
• EclipseCN / PhenoBERT
  A combined deep learning tool for automated recognition of human phenotype ontology
  ☆24Updated 2 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆44Updated 3 weeks ago
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated 2 weeks ago
• ncbi / tmVar3
  ☆17Updated 2 years ago
• krishnanlab / txt2onto
  Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
  ☆24Updated 9 months ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 4 years ago
• monarch-initiative / phenopacket-store
  Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.
  ☆24Updated last week
• ncbi / AIONER
  AIONER
  ☆55Updated 10 months ago
• ncbi / BioRED
  ☆26Updated last year
• LHNCBC / SemRep
  ☆67Updated 3 years ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆57Updated this week
• RTXteam / RTX
  Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
  ☆35Updated this week
• EmilyAlsentzer / rare-disease-simulation
  Simulate patients with rare genetic conditions
  ☆21Updated last year
• GeneDx / txt2hpo
  Python library for extracting HPO encoded phenotypes from text
  ☆29Updated last year
• ncbi / BioConceptVec
  ☆41Updated 5 years ago
• biopragmatics / pyobo
  📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
  ☆68Updated last week
• AnacletoLAB / RNA-KG
  ☆23Updated 6 months ago
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆13Updated 5 months ago