A full-text article retrieval pipeline for biomedical literature.
☆23Jul 9, 2026Updated 2 months ago
Alternatives and similar repositories for cadmus
Users that are interested in cadmus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardise text and table data…☆24Updated this week
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated 2 years ago
- A collection of useful python functions for looking up information and working with the Biolink Model☆26Aug 11, 2026Updated last month
- ☆24Mar 1, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Data portal client and server for NMDC.☆12Updated this week
- Turning Ontologies Plus Annotation Properties into Vectors☆36Sep 26, 2020Updated 5 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆34Mar 19, 2024Updated 2 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆66Updated this week
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆205Mar 28, 2024Updated 2 years ago
- 🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.☆41Sep 29, 2025Updated 11 months ago
- ☆16Aug 8, 2022Updated 4 years ago
- Django backend to varapp☆19Feb 9, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Converts Brat formatted annotations to CoNLL format for Named entity recognition☆20Sep 5, 2023Updated 3 years ago
- This repository contains the code accompanying the paper "Learning Informative Representations of Biomedical Relations with Latent Variab…☆15Sep 28, 2021Updated 4 years ago
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆44Jan 8, 2026Updated 8 months ago
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 12 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Ontology for representing scientific evidence and provenance information☆52Oct 2, 2025Updated 11 months ago
- ☆13Sep 30, 2023Updated 2 years ago
- ☆11Aug 18, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for proximity-based methods of link prediction.☆12Aug 11, 2025Updated last year
- CMU Linguistic Annotation Backend☆15Sep 22, 2025Updated 11 months ago
- a customzable pipeline for information extraction☆18Updated this week
- ☆15Mar 4, 2024Updated 2 years ago
- Hetnets in Python (relocated from dhimmel/hetio)☆103Sep 4, 2025Updated last year
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Biomedical Entity Linking Benchmark☆15Dec 10, 2024Updated last year
- Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.☆18Feb 2, 2026Updated 7 months ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CoCoScore: context-aware co-occurrence scores for text mining applications☆20Mar 30, 2019Updated 7 years ago
- This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that …☆12Sep 13, 2026Updated last week
- Network Embedding All the Things☆19Oct 4, 2022Updated 3 years ago
- Simple docker deployment of document layout analysis using detectron2☆19Nov 7, 2021Updated 4 years ago
- Research into identifying and correcting incorrect labels in the CoNLL-2003 corpus.☆12May 11, 2021Updated 5 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆100Oct 3, 2023Updated 2 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 3 years ago