Aptamers are single-stranded nucleic acid or amino acid polymers that recognize and bind to targets with high affinity and selectivity. The Aptamer Base is a database of detailed, structured information about the experimental conditions under which aptamers were selected and their binding affinity quantified.
☆16Jun 22, 2020Updated 6 years ago
Alternatives and similar repositories for aptamerbase
Users that are interested in aptamerbase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AptaNet as a Deep Learning approach for Aptamer-Protein Interaction Prediction☆28Jun 15, 2021Updated 5 years ago
- Supporting code for the paper "Predicting aptamer sequences that interact with target proteins using an Aptamer-Protein Interaction class…☆15Dec 31, 2021Updated 4 years ago
- ☆17May 16, 2023Updated 3 years ago
- alphafold FAPE loss☆10Sep 28, 2021Updated 4 years ago
- A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.☆29Apr 14, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆17Mar 7, 2026Updated 4 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆62Aug 3, 2024Updated last year
- A fast limit order book implementation in Go, inspired by voyager's winning 2011 QuantCup entry. (Also see kmanley/orderbook, the Python …☆14May 15, 2020Updated 6 years ago
- A Disruptor-Lite implementation in python☆14Mar 8, 2019Updated 7 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- Segmentation of nucleic acid binding interface on protein surface with geometric deep learning☆14May 3, 2023Updated 3 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- A small command line tool to fetch data from Zwift and report on it.☆10Nov 9, 2023Updated 2 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A fast price-time-quantity limit order book (LOB) matching engine written in Rust☆17Jan 11, 2025Updated last year
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆13Aug 15, 2022Updated 3 years ago
- JavaScript library for parsing ANT/Garmin .FIT files☆15Oct 2, 2023Updated 2 years ago
- Javascript client-side FIT file analyzer.☆11Nov 15, 2019Updated 6 years ago
- Web interface for browsing, search and filtering recent biorxiv submissions☆14May 7, 2017Updated 9 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 10 months ago
- A tiny toy block-chain implementation in python☆10Feb 9, 2021Updated 5 years ago
- ☆10Apr 28, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SMR-Portal: an online platform for integrative analysis of GWAS and xQTL data to identify complex trait genes.☆23Dec 2, 2025Updated 7 months ago
- ☆16Jun 27, 2025Updated last year
- Graph generative pre-trained transformer☆22Jun 3, 2025Updated last year
- Official code for "Integration of pre-trained protein language models into geometric deep learning networks"☆23Jun 14, 2025Updated last year
- Very large scale k-mer counting and analysis on Apache Spark.☆19Jul 9, 2026Updated 2 weeks ago
- Port of www.quantcup.org (implementing a fast stock exchange matching engine) from C to Rust☆19May 30, 2021Updated 5 years ago
- 小游戏代码混淆☆14Feb 27, 2020Updated 6 years ago
- Lock-free ring buffer in Go, support SPSC/SPMC/MPSC/MPMC implementations.☆22Dec 2, 2022Updated 3 years ago
- scikit-learn (sklearn) 常用的机器学习，包括回归(Regression)、降维(Dimensionality Reduction)、分类(Classfication)、聚类(Clustering)等方法☆18Nov 28, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆30Oct 3, 2023Updated 2 years ago
- POC Zwift clone.☆17Sep 11, 2024Updated last year
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆20Jan 17, 2024Updated 2 years ago
- dMaSIF implementation for google colab☆36Mar 24, 2023Updated 3 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Jul 20, 2021Updated 5 years ago
- Finance and Trading Protocols in Golang☆19Mar 2, 2026Updated 4 months ago
- Weather forecasting using recurrent neural network☆20Apr 7, 2020Updated 6 years ago