Alternatives and similar repositories for ProRNA3D-single

Users that are interested in ProRNA3D-single are comparing it to the libraries listed below

• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆30Updated 5 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆56Updated 4 months ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• brineylab / BALM-paper
  ☆17Updated 5 months ago
• GIST-CSBL / HoTS
  HoTS: Sequence-based prediction of binding regions and drug-target interactions.
  ☆26Updated 2 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 7 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆40Updated last month
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 10 months ago
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆74Updated 3 weeks ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆72Updated last week
• tymor22 / tm-vec
  ☆68Updated 8 months ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆36Updated 3 months ago
• programmablebio / ptm-mamba
  ☆70Updated last week
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆35Updated 8 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆66Updated 4 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated 2 weeks ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆27Updated 9 months ago
• Liuxg16 / GeoPPI
  ☆86Updated 2 years ago
• samsledje / ConPLex_dev
  ☆48Updated last year
• moritzgls / ESM-Effect
  ☆14Updated 3 months ago
• TviNet / NetSolP-1.0
  Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models
  ☆35Updated 5 months ago
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆46Updated 10 months ago
• Exscientia / abodybuilder3
  ☆50Updated 7 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆59Updated last year
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆29Updated 9 months ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆38Updated last year
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆36Updated 5 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆36Updated 6 months ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆39Updated 4 years ago