Single-sequence protein-RNA complex structure prediction with biological language models
☆18Sep 23, 2025Updated 10 months ago
Alternatives and similar repositories for ProRNA3D-single
Users that are interested in ProRNA3D-single are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Feb 7, 2023Updated 3 years ago
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆47Oct 17, 2024Updated last year
- Generalizable Cas9/sgRNA prediction models for multiple Cas9 variants☆11May 4, 2026Updated 2 months ago
- ☆26Oct 8, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆27Apr 24, 2024Updated 2 years ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 7 months ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated last month
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆83Aug 11, 2024Updated last year
- ☆12May 3, 2025Updated last year
- Systematic Multi-Trait AAV Capsid Engineering for Efficient Gene Delivery (Eid et al., Nature Communications, 2024)☆13Aug 26, 2024Updated last year
- Program to calculate SDPs using Noisy intermediate scale quantum (NISQ) computers.☆12Feb 3, 2025Updated last year
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Some tutorials to help people learn how to program the D-Wave quantum computer.☆13Oct 4, 2018Updated 7 years ago
- ☆14Mar 16, 2024Updated 2 years ago
- ☆10Jul 30, 2024Updated last year
- The LoCoHD metric for protein-protein structure comparison☆15Oct 1, 2025Updated 9 months ago
- ☆13Apr 24, 2024Updated 2 years ago
- ☆12Aug 28, 2024Updated last year
- A deep learning-based predictor of enzyme optimal pH☆12Jun 25, 2025Updated last year
- ☆17Sep 26, 2025Updated 9 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆24Dec 20, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reading comprehension based question-answering model for news articles.☆11Jun 22, 2022Updated 4 years ago
- Code for ICML 2021 paper "Regularizing towards Causal Invariance: Linear Models with Proxies" (ICML 2021)☆11Mar 14, 2022Updated 4 years ago
- These are the input files for MD simulation in Gromacs 5.0+☆14Apr 10, 2023Updated 3 years ago
- Code for the paper "Resource-efficient quantum algorithm for protein folding"☆16Jun 23, 2025Updated last year
- 使用PyQt5+FastAPI+SQLAlchemy+Redis+Celery做的一个登录注册页,使用邮箱注册与验证,前后分离,其中:QtLoginRegistrationClient仓库存放 GUI,QtLoginRegistrationServer仓库存放 API☆12Mar 25, 2024Updated 2 years ago
- ☆13Feb 11, 2021Updated 5 years ago
- model-based understanding of single-cell CRISPR screening☆29Dec 13, 2024Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- ☆18Nov 17, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RNAGenesis: A Generalist Foundation Model for Functional RNA Therapeutics☆33Jun 28, 2026Updated 3 weeks ago
- A biological dual-language foundation model☆12Jun 16, 2025Updated last year
- Zooming Memory Based Initialization (ZoMBI) algorithm for discovery of optima within challenging needle-in-a-haystack (extreme data imbal…☆19Feb 14, 2024Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆20Dec 18, 2022Updated 3 years ago
- ZDOCK predictions and PDB structures in C++ and Python☆15Updated this week
- Finds the optimal stem configuration of an RNA sequence using the LeapHybridCQMSampler.☆17Oct 31, 2023Updated 2 years ago
- ☆19Jan 11, 2024Updated 2 years ago