Simulation code for the prediction of RNA structures.
☆13Jan 21, 2025Updated last year
Alternatives and similar repositories for spqr
Users that are interested in spqr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- ☆16May 11, 2016Updated 9 years ago
- Force Fields☆14Oct 25, 2022Updated 3 years ago
- INFO239 (ex INFO185): Comunicaciones. Un curso de Ingeniería Civil Informática, Universidad Austral de Chile☆14Apr 6, 2023Updated 3 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆23Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Oct 27, 2022Updated 3 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- python simulation interface for molecular modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/…☆13Aug 24, 2016Updated 9 years ago
- ☆15Jan 27, 2025Updated last year
- Pipeline for protein folding using PconsC and Rosetta☆18May 21, 2018Updated 7 years ago
- ☆11Oct 23, 2025Updated 6 months ago
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- RNA sequence design for a target protein sequence☆13Apr 18, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 14 years ago
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- AngularJS filters wrapping the 'humanize' library☆10Jul 30, 2015Updated 10 years ago
- ☆11Apr 27, 2026Updated last week
- A searchable list of (almost) all Fabric mods.☆18Mar 2, 2025Updated last year
- A novel approach to pose selection in protein-ligand docking based on graph theory.☆20Nov 22, 2016Updated 9 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆14Nov 19, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- JavaScript Sequence Alignment Viewer☆11Mar 25, 2022Updated 4 years ago
- genvenn is a D3js project to visualise list/set data comparisons with standard symmetric venn diagrams. The project is aimed at providing…☆12Jun 28, 2017Updated 8 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆84Apr 3, 2026Updated last month
- DyNoPy☆11Sep 5, 2024Updated last year
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- RNAlien - unsupervised RNA family model construction☆13Jun 8, 2021Updated 4 years ago
- Flexible Artificial Intelligence Docking☆18Aug 27, 2025Updated 8 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is the implementation repository of our incoming ESEC/FSE 2021 paper: Exposing Numerical Bugs in Deep Learning via GradientBack-prop…☆15Oct 16, 2022Updated 3 years ago
- DOM Text Based Multiple Sequence Alignment Library☆20Jul 9, 2019Updated 6 years ago
- Physics Informed Neural Networks (PINNs) code to solve the 3D Poisson-Boltzmann equation.☆15Mar 31, 2025Updated last year
- Semiautomated layout of RNA tertiary structure diagrams☆15Feb 26, 2025Updated last year
- Demo of embedding words and documents into vector space☆18Aug 20, 2024Updated last year
- Using Gomacs from IPython notebook☆20Apr 8, 2014Updated 12 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 3 years ago