srnas / spqr

Related projects ⓘ

Alternatives and complementary repositories for spqr

• sarisabban / RosettaAbinitio
  A bash script for an automated Rosetta Abinitio folding simulation on an HPC
  ☆11Updated 4 years ago
• mungpeter / RAMAplot
  Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory
  ☆10Updated 2 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆50Updated this week
• proteinphysiologylab / frustratometeR
  ☆32Updated 3 weeks ago
• biomadeira / BioDownloader
  📦 A Command Line Tool for downloading protein structures, sequences and MSAs
  ☆10Updated 6 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆48Updated 3 months ago
• GodzikLab / FATCAT-dist
  ☆15Updated last year
• KULL-Centre / pdbwords
  Printing text using protein structures
  ☆11Updated 3 years ago
• marrink-lab / martini-workshop
  Martini Workshop: Simulating a Minimal Bacterial Cell
  ☆9Updated 6 months ago
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆41Updated 7 months ago
• Faezov / PDBrenum
  ☆27Updated 6 months ago
• Jian-Zhan / RNA-BRiQ
  Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…
  ☆15Updated 3 years ago
• ajasja / calculate_dihedrals
  A VMD script to calculate side-chain and backbone dihedrals (torsion angles)
  ☆14Updated 8 years ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆20Updated last year
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆28Updated last year
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 2 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆33Updated 2 years ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆54Updated 9 months ago
• n-szulc / fingeRNAt
  Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
  ☆28Updated 2 years ago
• rjdkmr / do_x3dna
  To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
  ☆23Updated last year
• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆22Updated 3 years ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆36Updated last month
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆45Updated last week
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated 9 months ago
• ssalentin / pymol-animations
  Tutorials and examples for nicer animations (movies) and images in PyMOL.
  ☆20Updated 9 years ago
• hiteshpatel379 / PyWATER
  ☆13Updated 6 years ago
• gerdos / PyRAMA
  Python implementation of the Ramachandran plot
  ☆43Updated 4 years ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆22Updated last year
• SNU-CSSB / RF2-Lite
  ☆20Updated 5 months ago