Simulation code for the prediction of RNA structures.
☆13Jan 21, 2025Updated last year
Alternatives and similar repositories for spqr
Users that are interested in spqr are comparing it to the libraries listed below
Sorting:
- ☆16May 11, 2016Updated 9 years ago
- python simulation interface for molecular modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/…☆13Aug 24, 2016Updated 9 years ago
- Force Fields☆14Oct 25, 2022Updated 3 years ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 5 years ago
- ☆11Oct 23, 2025Updated 4 months ago
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 14 years ago
- Pipeline for protein folding using PconsC and Rosetta☆18May 21, 2018Updated 7 years ago
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- Using Gomacs from IPython notebook☆20Apr 8, 2014Updated 11 years ago
- Flexible Artificial Intelligence Docking☆18Aug 27, 2025Updated 6 months ago
- A novel approach to pose selection in protein-ligand docking based on graph theory.☆20Nov 22, 2016Updated 9 years ago
- Python script that creates 2D protein-ligand interaction images☆14Apr 23, 2018Updated 7 years ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Oct 27, 2022Updated 3 years ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆22Updated this week
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- A repository for tutorials and FAQ's about LigParGen☆24Aug 12, 2018Updated 7 years ago
- A platform to do RNA science☆27Mar 7, 2021Updated 4 years ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated 9 months ago
- Kinetic Monte Carlo with multiple time scales and sensitivity analysis☆28Oct 29, 2022Updated 3 years ago
- ☆32Apr 18, 2025Updated 10 months ago
- A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites☆29May 23, 2018Updated 7 years ago
- Ramirez Lab WIKI, where you could find Tutorials, Script Library, Gallery, FAQ, and a little bit more☆13Sep 11, 2024Updated last year
- MMTSB Tool Set☆33Jan 26, 2026Updated last month
- cp2k test☆10May 26, 2019Updated 6 years ago
- RNA sequence design for a target protein sequence☆13Jan 20, 2026Updated last month
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆65Nov 26, 2025Updated 3 months ago
- volume calculation and segmentation☆36May 20, 2024Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Updated this week
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Jun 25, 2022Updated 3 years ago
- a logistics and persistence engine for the analysis of molecular dynamics trajectories☆30Jan 24, 2020Updated 6 years ago
- Python module for identification of conserved water molecules from molecular dynamics trajectories.☆14Feb 12, 2026Updated 3 weeks ago
- Collected scripts for Pymol☆10Mar 18, 2015Updated 10 years ago
- A software for mapping energy landscape with a variety of methods, using classical potentials. Based on the LAMMPS MD package.☆11Jan 29, 2021Updated 5 years ago
- Fast estimation of ion-pairing for screening electrolytes☆11Aug 23, 2022Updated 3 years ago
- This program computes the sum-frequency generation (SFG) spectrum for a give MD trajectory of interfacial water molecules. The program ca…☆12Jul 24, 2023Updated 2 years ago
- WebGL based molecular viewer☆36Feb 13, 2026Updated 2 weeks ago