Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
☆32Jun 3, 2022Updated 4 years ago
Alternatives and similar repositories for fingeRNAt
Users that are interested in fingeRNAt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- The LoCoHD metric for protein-protein structure comparison☆15Oct 1, 2025Updated 10 months ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆59Mar 20, 2024Updated 2 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 4 years ago
- FingerPrint Kit - Python-based cheminformatics package for fingerprint-related tasks☆12Jun 4, 2025Updated last year
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 3 years ago
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆41Aug 3, 2026Updated last week
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆33Oct 14, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11May 22, 2026Updated 2 months ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 4 years ago
- RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome a…☆18May 9, 2023Updated 3 years ago
- Modelling protein conformations with Alphafold3☆16Jun 11, 2026Updated 2 months ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 4 years ago
- GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)☆16Nov 28, 2023Updated 2 years ago
- ZDOCK predictions and PDB structures in C++ and Python☆15Jul 22, 2026Updated 3 weeks ago
- G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://g…☆46Apr 9, 2026Updated 4 months ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rapid structure-based virtual screening for RNA targets.☆29Updated this week
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Aug 6, 2026Updated last week
- A scoring function model based on 3D convolutional neural network for protein-ligand binding affinity prediction.☆17Oct 8, 2021Updated 4 years ago
- ☆11Sep 2, 2024Updated last year
- Shape-based alignment of molecules using 3D point-based representation☆26Apr 8, 2026Updated 4 months ago
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Program to find drug-like RNA-ligand binding pockets.☆25May 26, 2026Updated 2 months ago
- Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake,…☆708Jul 3, 2026Updated last month
- ☆13May 30, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Machine learning utility functions and classes.☆12Jan 14, 2023Updated 3 years ago
- The bioplib library☆12Jul 25, 2023Updated 3 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆61Oct 17, 2022Updated 3 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Updated this week
- A bayesian retrosynthesis algorithm☆15Jun 1, 2026Updated 2 months ago
- Binding pocket optimization based on force fields and docking scoring functions☆39Mar 19, 2025Updated last year
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago