Alternatives and similar repositories for SCS_CAF:

Users that are interested in SCS_CAF are comparing it to the libraries listed below

• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆60Updated 3 years ago
• jmzeng1314 / myScRNA-seq
  ☆13Updated 7 years ago
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆77Updated 2 years ago
• jmzeng1314 / IRseq
  ☆10Updated 7 years ago
• YutingPKU / SingleCell-Multiomics
  ☆64Updated 2 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago
• MSZaki / Aging-and-CR-rat-atlas
  Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…
  ☆28Updated 5 years ago
• BioinformaticsFMRP / PanCanStem_Web
  ☆29Updated 3 years ago
• YutingPKU / PaperWork-scRNA-GSE111527-mouseSVZ
  Reanalyze of GSE111527 scRNA-seq data
  ☆19Updated 4 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last year
• cxzhu / Paired-Tag
  Analysis of Paired-Tag datasets
  ☆39Updated last year
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆77Updated 4 months ago
• youqiongye / CRC_scRNAseq
  ☆45Updated 3 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• youqiongye / HAMFA
  Hypoxia associated molecular feature analysis
  ☆35Updated 5 years ago
• liulab-dfci / RIMA_pipeline
  ☆78Updated last year
• lessonskit / Single-cell-RNA-sequencing-of-human-kidney
  R-code used for single-cell RNA-Seq analysis of kidney data.
  ☆18Updated 5 years ago
• jmzeng1314 / ChIP-seq-analysis
  ChIP-seq analysis notes from Tommy Tang
  ☆19Updated 8 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• IzarLab / CUIMC-NYP_COVID_autopsy_lung
  ☆42Updated 3 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆65Updated last year
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
  ☆84Updated 5 months ago
• ShixiangWang / install_GISTIC
  Install GISTIC2 by one line code; GISTIC2 docker image
  ☆41Updated last year
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 3 weeks ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆57Updated 4 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆96Updated last year
• Coolgenome / iTALK
  ☆59Updated 5 years ago