rkhetani / In-depth-NGS-Data-Analysis-CourseLinks
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
☆16Updated 6 years ago
Alternatives and similar repositories for In-depth-NGS-Data-Analysis-Course
Users that are interested in In-depth-NGS-Data-Analysis-Course are comparing it to the libraries listed below
Sorting:
- ☆50Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆57Updated 10 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- ☆56Updated 3 weeks ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Scripts for next generation sequencing☆49Updated 6 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- RNA-seq data analysis practical☆61Updated 11 years ago
- microRNA profiling pipeline☆80Updated 3 years ago
- ☆72Updated 2 years ago
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆101Updated 3 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆52Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 months ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- ☆74Updated 4 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated last month
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Updated 3 years ago