rkhetani / In-depth-NGS-Data-Analysis-CourseLinks
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
☆16Updated 6 years ago
Alternatives and similar repositories for In-depth-NGS-Data-Analysis-Course
Users that are interested in In-depth-NGS-Data-Analysis-Course are comparing it to the libraries listed below
Sorting:
- ☆50Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆54Updated 7 months ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- ☆27Updated 2 years ago
- ☆55Updated last week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 8 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 2 months ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆46Updated last year
- microRNA profiling pipeline☆79Updated 3 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆48Updated 2 years ago
- Bioinformatics and genomics resources☆78Updated last month
- ☆72Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- ☆73Updated 3 years ago
- ☆33Updated 4 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆52Updated this week
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 2 months ago
- An R interface to the MEME Suite☆52Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 8 months ago