☆18May 12, 2026Updated last week
Alternatives and similar repositories for OpenMiChroM
Users that are interested in OpenMiChroM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a repo used for CTBP tech talks☆13Nov 12, 2025Updated 6 months ago
- OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM.☆12Feb 20, 2026Updated 3 months ago
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Jan 12, 2026Updated 4 months ago
- Topoly Python test package☆10Sep 8, 2025Updated 8 months ago
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11Dec 8, 2023Updated 2 years ago
- 4D Genome Reconstruction and Dynamics Prediction: Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method☆13May 8, 2026Updated 2 weeks ago
- Rigid Body Dynamics with OpenMM☆12May 29, 2018Updated 7 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆38May 28, 2025Updated 11 months ago
- ☆24Jun 16, 2025Updated 11 months ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- A bioinformatics toolset for multiomic analysis☆21May 11, 2026Updated last week
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆18Apr 9, 2026Updated last month
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- Calculate position-dependent diffusivity functions from trajectory data (usually from molecular dynamics). The approach is described in h…☆11Mar 25, 2025Updated last year
- ☆22Aug 11, 2020Updated 5 years ago
- The scripts used for the analyses in TOME project☆24Nov 28, 2025Updated 5 months ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- Python solver for the Brownian, Stochastic, or Noisy Differential Equations☆12Jul 12, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- example demonstrating a free energy estimation starting from OFF and OpenMM☆12Oct 21, 2020Updated 5 years ago
- General purpose repository for all things factorio☆16May 15, 2026Updated last week
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆22May 11, 2023Updated 3 years ago
- This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markov…☆11Sep 25, 2025Updated 7 months ago
- An example of how to write a plugin for OpenMM☆31Jan 25, 2024Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16May 11, 2026Updated last week
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 5 years ago
- OpenMM implementation of MOFF, MRG-CG, and HPS models.☆42Mar 31, 2026Updated last month
- Repository with code supporting PNAS article☆11Jun 6, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Python toolkit for the analyis of lipid membrane simulations☆35Oct 24, 2025Updated 6 months ago
- MDAnalysis wrapper around Packmol☆37May 1, 2023Updated 3 years ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆74Jun 12, 2023Updated 2 years ago
- ☆13Jun 10, 2024Updated last year
- ☆13Apr 15, 2026Updated last month
- Code for the Materials Scholar website☆10May 2, 2023Updated 3 years ago
- ☆12Apr 13, 2020Updated 6 years ago