Alternatives and similar repositories for OpenMiChroM

Users that are interested in OpenMiChroM are comparing it to the libraries listed below

• CollepardoLab / CollepardoLab_Chromatin_Model
  Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…
  ☆12Updated 2 years ago
• cabb99 / open3spn2
  An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
  ☆18Updated last month
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆36Updated last week
• Faezov / PDBrenum
  ☆30Updated 3 weeks ago
• ncbi / SSDraw
  ☆85Updated last year
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 5 months ago
• LPDI-EPFL / rstoolbox
  Python Toolbox For Rosetta Silent Files Processing
  ☆16Updated 6 years ago
• GodzikLab / FATCAT-dist
  ☆15Updated 2 years ago
• pamellaccar / gromacs_with_packmol
  A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.
  ☆36Updated last year
• open2c / polychrom
  Chromosome polymer simulations and in silico capture experiments
  ☆48Updated last month
• marrink-lab / martini-workshop
  Martini Workshop: Simulating a Minimal Bacterial Cell
  ☆11Updated last year
• mungpeter / RAMAplot
  Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory
  ☆9Updated 3 years ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆52Updated 4 months ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆30Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• graik / biskit
  A Python platform for Structural Bioinformatics
  ☆56Updated 2 months ago
• gregorpatof / nrgten_package
  Najmanovich Research Group Toolkit for Elastic Networks
  ☆11Updated 2 years ago
• sb-ncbr / AlphaCharges
  𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFold DB
  ☆11Updated 4 months ago
• encore-similarity / encore
  An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…
  ☆14Updated 6 years ago
• cmbi / dssp
  The DSSP building software
  ☆43Updated last year
• pnnl / PTMPSI
  ☆16Updated 2 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆24Updated 3 months ago
• kadiliissaar / DeePhase
  DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…
  ☆16Updated 3 years ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆28Updated 2 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• ljocha / gromacs-plumed-docker
  ☆13Updated 3 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 2 months ago
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆42Updated last year