The-Mitra-Lab / pycallingcardsLinks
Python package designed for single-cell calling cards data
☆16Updated 8 months ago
Alternatives and similar repositories for pycallingcards
Users that are interested in pycallingcards are comparing it to the libraries listed below
Sorting:
- HiChiP QC and data analysis☆13Updated last year
- ☆21Updated 2 years ago
- ☆27Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆82Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆18Updated last month
- ☆64Updated 4 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Updated 2 weeks ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- ☆38Updated 2 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 7 months ago
- Software for Quantifying Interspersed Repeat Expression☆65Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- ☆23Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated last week
- ☆12Updated 6 years ago
- ☆33Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Updated 9 months ago
- 4C-seq processing pipeline☆26Updated 10 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- ☆20Updated last week
- A list of alternative splicing analysis resources☆47Updated 10 months ago