Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.
☆22May 11, 2020Updated 5 years ago
Alternatives and similar repositories for genia-dependency-trees
Users that are interested in genia-dependency-trees are comparing it to the libraries listed below
Sorting:
- Clinical Text Mining☆12Aug 15, 2017Updated 8 years ago
- Medication Extraction and Reconciliation Knowledge Instrument☆13Dec 5, 2013Updated 12 years ago
- The advanced implementation for BioChatter, using Next.js☆17Jan 17, 2025Updated last year
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)☆12Dec 23, 2017Updated 8 years ago
- A convolutional neural network model for relation extraction.☆12Mar 24, 2023Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Nov 9, 2021Updated 4 years ago
- A simple CoNLL-X to tikz-dependency converter.☆20Mar 5, 2013Updated 13 years ago
- Python interface for converting Penn Treebank trees to Stanford Dependencies and Universal Depenencies☆69Mar 15, 2019Updated 6 years ago
- Code for "GU IRLAB at SemEval-2018 Task 7: Tree-LSTMs for Scientific Relation Classification"☆17Jan 10, 2020Updated 6 years ago
- User-friendly extensions to the Disease Ontology☆20Sep 9, 2016Updated 9 years ago
- Pylint plugin to for PyTorch Tensor Annotations / Operations☆20May 13, 2019Updated 6 years ago
- A python library for the Semantic Scholar (S2) API with typed pydantic objects and various nifty functionalities.☆22Apr 7, 2021Updated 4 years ago
- Classes for ClinicalTrials.gov related projects☆48Aug 13, 2019Updated 6 years ago
- Extension for OpenRefine to support FAIR metadata☆25Dec 6, 2022Updated 3 years ago
- NLM .nxml to text format conversion☆24Apr 19, 2015Updated 10 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆26Jun 17, 2016Updated 9 years ago
- Literature mining for T cell relations☆23Aug 5, 2022Updated 3 years ago
- NCBI disease corpus - related resources☆31May 10, 2017Updated 8 years ago
- ontology editor built on Owlready2☆34Mar 4, 2023Updated 3 years ago
- Standalone pre-training recipe with JAX+Flax☆35Apr 3, 2023Updated 2 years ago
- biaffineparser: Deep Biaffine Attention Dependency Parser☆57Jul 12, 2021Updated 4 years ago
- Multi-step AI agents powered by Gemini 2.0 and the LangGraph framework. These agents orchestrate complex workflows and enhance their reas…☆10Dec 19, 2024Updated last year
- Files for the Karma tutorial at TCDL, Texas Conference on Digital Libraries☆29Apr 17, 2016Updated 9 years ago
- Dependency Parsing as Sequence Labeling☆27Jul 25, 2024Updated last year
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Dec 17, 2017Updated 8 years ago
- ☆77Dec 20, 2023Updated 2 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Mar 18, 2019Updated 6 years ago
- A python package for removing duplicate text in clinical notes or other documents☆39Aug 6, 2020Updated 5 years ago
- ☆10Apr 20, 2023Updated 2 years ago
- Overcooked! 2 TAS Development Framework☆10Aug 18, 2023Updated 2 years ago
- XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevi…☆11Jul 25, 2025Updated 7 months ago
- Generative and Parametric design code: featuring Processing / Python / Javascript / HTML / CSS☆14Nov 4, 2020Updated 5 years ago
- Exploratory Data Analysis of Time Series Data and Forecasting using Naïve Approach, Moving Average Method, Simple Exponential Smoothenin…☆12Jul 2, 2018Updated 7 years ago
- ☆13Nov 21, 2025Updated 3 months ago
- A series of interactive labs we prepared for the Introduction into Machine Learning and Deep Learning course. The content of the series i…☆11Dec 3, 2020Updated 5 years ago
- Combining Distant and Direct Supervision for Neural Relation Extraction☆33Sep 15, 2019Updated 6 years ago
- a module to calculate the MeSH similarity☆27Dec 2, 2021Updated 4 years ago
- spaCy pipeline component for generating spaCy KnowledgeBase Alias Candidates for Entity Linking☆87Oct 6, 2022Updated 3 years ago
- MkDocs plugin to generate semantic reference Markdown pages from a knowledge graph☆40Jul 10, 2024Updated last year