allenai / genia-dependency-treesLinks
Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.
☆22Updated 5 years ago
Alternatives and similar repositories for genia-dependency-trees
Users that are interested in genia-dependency-trees are comparing it to the libraries listed below
Sorting:
- ☆76Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 5 years ago
- Named Entity Recognition for biomedical entities☆49Updated 2 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 7 months ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 5 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆66Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 8 years ago
- Relevant code for the "Show Your Work" paper, EMNLP 2019.☆18Updated 6 years ago
- An ontology matcher for matching entities between knowledgebases☆71Updated 3 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 7 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- ☆15Updated 5 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆50Updated 5 years ago
- Extracting scientific claims from biomedical abstracts (powered by AllenNLP)☆143Updated 4 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆131Updated 2 years ago
- Conversion from brat-flavored standoff to CoNLL format☆56Updated 5 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 5 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Reach Biomedical Information Extraction☆98Updated last year
- Machine reading comprehension on clinical case reports