allenai / genia-dependency-trees
Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.
☆22Updated 4 years ago
Alternatives and similar repositories for genia-dependency-trees:
Users that are interested in genia-dependency-trees are comparing it to the libraries listed below
- Conversion from brat-flavored standoff to CoNLL format☆50Updated 4 years ago
- ☆71Updated last year
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 5 years ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- ☆15Updated 4 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Text annotation tool for team collaboration☆40Updated last year
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Python library for work with BioCreative files☆13Updated 6 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 6 years ago
- A convolutional neural network model for relation extraction.☆13Updated last year
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 8 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆22Updated 4 years ago
- Corpus of Open Access articles from multiple fields in Science, Technology, and Medicine.☆73Updated 7 years ago
- MinScIE is an Open Information Extraction system which provides structured knowledge enriched with semantic information about citations.☆15Updated 5 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆48Updated 8 months ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- Language Model and Text Classification for German Language using Deep Learning☆18Updated 6 years ago
- ☆30Updated last week
- Classes for ClinicalTrials.gov related projects☆48Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Python code for reading Brat Repositories. Supports saving and reading from XML files for easy acces to annotations.☆41Updated 5 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago