allenai / genia-dependency-trees
Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.
☆19Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for genia-dependency-trees
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆50Updated 3 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆41Updated 4 years ago
- Named Entity Recognition for biomedical entities☆47Updated last year
- ☆70Updated 11 months ago
- Tools for working with the S800 corpus☆11Updated 4 years ago
- ☆15Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 5 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆61Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 8 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆44Updated 4 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 4 years ago
- NCBI disease corpus - related resources☆27Updated 7 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 6 years ago
- ☆30Updated last week
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- ☆16Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆48Updated 6 months ago
- Python library for converting between BioNLP formats☆20Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Public release of the DeepPhe analytic software☆30Updated last year
- ☆90Updated 5 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆155Updated last year
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year