R-Index-F Library for Pattern Matching
☆12Aug 8, 2024Updated last year
Alternatives and similar repositories for r-index-f
Users that are interested in r-index-f are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14May 11, 2018Updated 8 years ago
- Wavelet tree based on a fixed block boosting technique☆16May 18, 2021Updated 5 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆69May 31, 2023Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Paper Collection for Stringologists☆17Jul 10, 2026Updated 2 weeks ago
- A new lossless data compression algorithm☆12Nov 19, 2025Updated 8 months ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year
- Dynamic succinct/compressed data structures☆118Dec 17, 2025Updated 7 months ago
- ☆17Aug 8, 2025Updated 11 months ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 4 years ago
- String Visualizer☆12Dec 18, 2025Updated 7 months ago
- C++ Implementation of Zip Trees☆14Nov 5, 2022Updated 3 years ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆14Sep 5, 2025Updated 10 months ago
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆46Sep 4, 2024Updated last year
- Pan-Genomic Matching Statistics☆58Apr 3, 2024Updated 2 years ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 5 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Compact Tree Representation☆16Mar 16, 2017Updated 9 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆19Nov 1, 2023Updated 2 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- oc版俄罗斯方块游戏☆12Dec 30, 2015Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of Suffix Array Construction Algorithms (SACAs)☆35Mar 29, 2019Updated 7 years ago
- Method to measure the amount of allocated memory of a program at run-time.☆71Apr 4, 2022Updated 4 years ago
- ☆11Feb 21, 2023Updated 3 years ago
- BWT tunneling☆12Feb 4, 2018Updated 8 years ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆22Jul 1, 2026Updated 3 weeks ago
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- Efficient construction of the BWT using string compression☆22May 26, 2026Updated 2 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Jul 15, 2026Updated last week
- Suite of universal indexes for Highly Repetitive Document Collections☆24May 14, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast Approximate Pattern Matching using Search Schemes☆17Jul 11, 2026Updated 2 weeks ago
- Learned Monotone Minimal Perfect Hashing☆32Apr 1, 2025Updated last year
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆27Dec 2, 2025Updated 7 months ago
- BWT construction and search☆129Jan 14, 2026Updated 6 months ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 3 weeks ago
- ☆14Dec 26, 2025Updated 7 months ago