Tool for comparing mutation calls in VCF format
☆12Sep 7, 2013Updated 13 years ago
Alternatives and similar repositories for VCFcomparator
Users that are interested in VCFcomparator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 8 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Find and characterise transposable element insertions☆21May 26, 2023Updated 3 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- ☆13Feb 19, 2017Updated 9 years ago
- Assembly Based ReAligner☆74May 24, 2018Updated 8 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Sep 16, 2021Updated 5 years ago
- RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data☆10Aug 18, 2016Updated 10 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- ☆25May 21, 2021Updated 5 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆36Aug 13, 2020Updated 6 years ago
- NGSTools☆16Mar 3, 2017Updated 9 years ago
- Ultrafast VCF GenoType Compressor (GTC) with instant random access, shrinking the 4.3 TB HRC dataset (27k samples, 40M variants) down to …☆16Oct 5, 2026Updated 2 weeks ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 10 years ago
- Strict VCF Parser☆10Jan 17, 2014Updated 12 years ago
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- Haplotype phaser for next-generation sequencing data☆14Jan 13, 2022Updated 4 years ago
- Code for my Summer of Code Project, "loci-NGS", which is a program for manipulating, storing and outputting large multi-locus datasets.☆10Jul 16, 2012Updated 14 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- This project is no longer maintained.☆13Oct 11, 2012Updated 14 years ago
- S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.☆12Apr 2, 2014Updated 12 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Creates a rarefaction curve to measure complexity in RNA Seq data using start position☆13Apr 2, 2017Updated 9 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 9 years ago