hammerlab / pygdcLinks
Python API for Genomic Data Commons
☆19Updated 8 years ago
Alternatives and similar repositories for pygdc
Users that are interested in pygdc are comparing it to the libraries listed below
Sorting:
- An unsupervised transfer learning approach for rare disease transcriptomics☆44Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Python biomart API☆68Updated 2 years ago
- Python client for MyVariant.info web services.☆23Updated 7 months ago
- examples to run monorail externally☆17Updated 9 months ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆84Updated 7 months ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆92Updated 7 months ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- Code and documentation for the curation of cellxgene datasets☆49Updated this week
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 6 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Updated 6 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Python implementation of the Loom file format - http://loompy.org☆146Updated 8 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year