hammerlab / pygdcLinks
Python API for Genomic Data Commons
☆20Updated 9 years ago
Alternatives and similar repositories for pygdc
Users that are interested in pygdc are comparing it to the libraries listed below
Sorting:
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- Python client for MyVariant.info web services.☆23Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 6 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Updated 3 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Updated last year
- Python implementation of the Loom file format - http://loompy.org☆148Updated last year
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Updated 8 years ago
- examples to run monorail externally☆19Updated last year
- Downloader for ENCODE☆32Updated 5 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 7 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- A simple pythonic interface to biomart.☆57Updated 6 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆42Updated 5 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- MyGene.info: A BioThings API for gene annotations☆130Updated 5 months ago
- Normalization for single cell RNA-seq data☆51Updated 7 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆25Updated 4 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆89Updated 4 months ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago