JetBrains-Research / bigLinks
BigWIG, BigBED and TDF for the JVM
☆14Updated 4 years ago
Alternatives and similar repositories for big
Users that are interested in big are comparing it to the libraries listed below
Sorting:
- Bioinformatics library in Kotlin☆33Updated last month
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆23Updated 8 years ago
- Bioinformatics for the Scala programming language☆111Updated last year
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- ☆15Updated 3 months ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Updated 6 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Updated 7 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly☆84Updated 7 years ago
- Probabilistic HLA typing☆35Updated 5 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- Spark VCF data source implementation for Dataframes☆14Updated 3 years ago
- python script to programmatically enrich your data using Enrichr API☆12Updated 8 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Updated last year
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 4 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- This BLENDER has been sunsetted☆16Updated 9 months ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 3 years ago
- WebApp for DNA variants interpretation☆13Updated last month
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Updated 3 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Temporal Pathway Synthesizer☆17Updated last year
- Genomics datastructures using Apache Arrow☆21Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Updated 8 years ago
- This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow☆9Updated 6 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago