sebhtml / ray
Ray -- Parallel genome assemblies for parallel DNA sequencing
☆66Updated 7 years ago
Alternatives and similar repositories for ray:
Users that are interested in ray are comparing it to the libraries listed below
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- scripts to parse IrysView output☆39Updated 9 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Updated 2 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Graph based multi genome aligner☆46Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Windowed Adaptive Trimming for fastq files using quality☆25Updated 9 years ago
- de novo virus assembler of Illumina paired reads☆54Updated 3 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆42Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Updated 5 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆44Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- Take a list of Pacbio files (.fofn) and creates a spreadsheet for data submission to the sequuence read archive (SRA)☆13Updated 8 years ago
- ☆49Updated 2 years ago
- An Oxford Nanopore Basecaller☆71Updated 3 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆84Updated 6 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆57Updated last year
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 5 years ago