Ray -- Parallel genome assemblies for parallel DNA sequencing
☆68Jul 26, 2017Updated 9 years ago
Alternatives and similar repositories for ray
Users that are interested in ray are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- de novo sequence assembler using string graphs☆244Aug 8, 2019Updated 7 years ago
- biosal is a distributed BIOlogical Sequence Actor Library.☆22Apr 28, 2015Updated 11 years ago
- ☆11Jan 10, 2018Updated 8 years ago
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 13 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆51Jun 5, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A sequence demultiplexer for the Illumina HiSeq technology☆21Apr 29, 2013Updated 13 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- An extensible framework for genome assembly.☆12Nov 10, 2022Updated 3 years ago
- A 3'-end adapter contaminant trimmer☆98Jan 23, 2018Updated 8 years ago
- Assemble large genomes using short reads☆334Apr 30, 2026Updated 5 months ago
- High throughput, pain-free big data pipelines.☆29Mar 11, 2017Updated 9 years ago
- Small utilities for working with fastq sequence files.☆123Oct 4, 2022Updated 4 years ago
- Windowed Adaptive Trimming for fastq files using quality☆229May 8, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- BEETL☆98Apr 15, 2023Updated 3 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Dec 6, 2013Updated 12 years ago
- Computes FRC from SAM/BAM file and not from afg files☆17Oct 5, 2018Updated 8 years ago
- BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages☆38Oct 5, 2010Updated 16 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆68Sep 10, 2014Updated 12 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆297Oct 13, 2025Updated last year
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Hands-free microbial genome assembly☆11Jul 11, 2018Updated 8 years ago
- GridVar is a jQuery plugin that visualizes multi-dimensional datasets as layers organized in a row-column format.☆14Feb 21, 2014Updated 12 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- Validate FastQ Files☆36Oct 30, 2018Updated 7 years ago
- Genome Annotation for the Masses☆36Jul 9, 2017Updated 9 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project r…☆150Oct 27, 2021Updated 5 years ago
- User-friendly tool to quickly go from 16S rRNA sequence data to an OTU matrix☆10Apr 16, 2014Updated 12 years ago
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆58Aug 21, 2014Updated 12 years ago
- extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output☆37Aug 24, 2015Updated 11 years ago