griffithlab / civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
☆50Updated last year
Alternatives and similar repositories for civic-client:
Users that are interested in civic-client are comparing it to the libraries listed below
- ☆68Updated 2 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Backend Server for CIViC Project☆39Updated last year
- Collection of notes and scripts related to NGS☆14Updated 2 months ago
- An awk-like VCF parser☆56Updated last year
- CNV screening and annotation tool☆24Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 5 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆52Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 4 years ago
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Reference-free duplex sequencing pipeline.☆18Updated 2 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆23Updated 6 years ago
- Tools for early stage alignment file processing☆93Updated 6 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- ☆46Updated 5 years ago