griffithlab / civic-clientLinks
Web client for CIViC: Clinical Interpretations of Variants in Cancer
☆50Updated last year
Alternatives and similar repositories for civic-client
Users that are interested in civic-client are comparing it to the libraries listed below
Sorting:
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- ☆68Updated 2 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Backend Server for CIViC Project☆39Updated last year
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆56Updated 5 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 8 years ago
- Collection of notes and scripts related to NGS☆14Updated 4 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated this week
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆21Updated 4 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 7 months ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- ☆78Updated 11 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago