Alternatives and similar repositories for pathway2vec

Users that are interested in pathway2vec are comparing it to the libraries listed below

• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago
• Toepfer-Lab / cobramod
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…
  ☆15Updated 2 weeks ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• Case-esaC / iDrug
  ☆19Updated 5 years ago
• mwang87 / GNPS_MASST
  ☆13Updated 2 months ago
• madeleineernst / pyMolNetEnhancer
  ☆20Updated 2 years ago
• GPZ-Bioinfo / tmap
  topological data analysis of population-scale microbiomes
  ☆31Updated 2 years ago
• netlab-ku / pyPARAGON
  PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
  ☆11Updated 8 months ago
• hzi-bifo / epitope-prediction
  ☆18Updated last year
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆39Updated 2 years ago
• broadinstitute / bmxp
  The tools that constitute a nontargeted LCMS metabolomics data processing pipeline, created and used by the Broad Institute Metabolomics …
  ☆13Updated last month
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 3 months ago
• ML4GLand / SeqPro
  Genomic sequence preprocessing toolkit
  ☆12Updated 3 weeks ago
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆16Updated last year
• computational-chemical-biology / ChemWalker
  ☆11Updated last year
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 4 years ago
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆28Updated 2 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆27Updated 2 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆19Updated 4 years ago
• krishnanlab / GenePlexus
  Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"
  ☆10Updated 3 years ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆13Updated 6 years ago
• wilkelab / ProteinEvolutionToolbox
  ☆14Updated 9 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆35Updated last year
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆13Updated 2 years ago
• mentatpsi / KEGG-Crawler
  A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
  ☆21Updated last year
• computational-metabolomics / structToolbox
  R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis m…
  ☆10Updated last month
• idslme / IDSL_MINT
  A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data
  ☆24Updated last year
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆20Updated 2 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago