hallamlab / pathway2vecLinks
Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction
☆17Updated 4 years ago
Alternatives and similar repositories for pathway2vec
Users that are interested in pathway2vec are comparing it to the libraries listed below
Sorting:
- DeepECtransformer☆29Updated 2 years ago
- ☆11Updated last year
- ☆20Updated 2 years ago
- ☆14Updated 3 weeks ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated last year
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆16Updated 2 weeks ago
- ☆17Updated 3 years ago
- Code for LazyAF pipeline☆23Updated last year
- Molecular formula discovery via bottom-up MS/MS interrogation☆13Updated last year
- Peptide library design☆23Updated 5 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated 2 years ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆33Updated last week
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Gaussian process models for optimizing channelrhodopsin properties.☆13Updated 5 years ago
- ☆38Updated 2 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated 2 years ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Updated 2 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆24Updated this week
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 3 years ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆29Updated 3 years ago
- ☆12Updated last year
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆65Updated 5 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆20Updated 7 years ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Updated 2 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Updated 3 years ago
- A convolutional neural network to predict PPI interactions☆42Updated 7 years ago