Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction
☆17Jul 8, 2021Updated 5 years ago
Alternatives and similar repositories for pathway2vec
Users that are interested in pathway2vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆13Nov 28, 2023Updated 2 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Hierarchical Embedding for Drugs☆17Apr 18, 2024Updated 2 years ago
- Python package for handling IHM mmCIF and BinaryCIF files☆18Sep 2, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 8 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆12Apr 22, 2026Updated 4 months ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- Structure Generator based on R-Group (SGRG)☆11Sep 28, 2019Updated 6 years ago
- A Deep LEArning-based Mass Spectra Embedder for spectral similarity scoring☆12Jul 17, 2026Updated 2 months ago
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 5 years ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated 3 months ago
- Package for analyzing MS with Python☆10Jan 11, 2018Updated 8 years ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆34Jun 10, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Nov 17, 2020Updated 5 years ago
- ☆12Feb 20, 2026Updated 6 months ago
- ☆38Oct 16, 2023Updated 2 years ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- Shiny app for retention time prediction☆11Dec 1, 2025Updated 9 months ago
- data processing for MS-based metabolomics☆15May 28, 2026Updated 3 months ago
- ☆15Jun 3, 2021Updated 5 years ago
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆16Sep 3, 2026Updated 2 weeks ago
- ☆15Aug 15, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Mass spectral library manager☆14Apr 9, 2020Updated 6 years ago
- Junction Tree Variational AutoEncoder Implementation Attempt☆11Jun 21, 2018Updated 8 years ago
- Searching large collections of sequencing data with genome-scale queries☆21Updated this week
- material for cheminfo tutorial☆13Oct 26, 2023Updated 2 years ago
- Transformer in Chemical Language Model sometimes misunderstands chirality☆13Apr 19, 2024Updated 2 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆19Nov 10, 2025Updated 10 months ago
- ☆13Nov 5, 2020Updated 5 years ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Apr 25, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Apr 23, 2019Updated 7 years ago
- Reinforcement Learning based bioretrosynthesis tool☆60Apr 2, 2025Updated last year
- GC/LC-MS data analysis for environmental science☆18Apr 9, 2026Updated 5 months ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 3 years ago
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆17Updated this week
- This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…☆16Jan 21, 2021Updated 5 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated 2 years ago