Alternatives and similar repositories for pathway2vec:

Users that are interested in pathway2vec are comparing it to the libraries listed below

• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆11Updated last year
• jurgjn / af-protein-universe
  ☆23Updated last year
• TattaBio / OMG
  ☆31Updated 7 months ago
• enveda / RPath
  Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…
  ☆17Updated 8 months ago
• netlab-ku / pyPARAGON
  PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
  ☆11Updated 4 months ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆28Updated last year
• AnacletoLAB / RNA-KG
  ☆20Updated 4 months ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated 2 years ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago
• Case-esaC / iDrug
  ☆19Updated 4 years ago
• drug2ways / drug2ways
  A Python package for drug discovery by analyzing causal paths on multiscale networks
  ☆26Updated 8 months ago
• hzi-bifo / epitope-prediction
  ☆16Updated 9 months ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆38Updated 2 weeks ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated 2 weeks ago
• seffnet / seffnet
  Network representation learning on drug-target-side effects-indication graphs for side effect prediction
  ☆13Updated 5 years ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆39Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆37Updated 3 months ago
• aedera / anc2vec
  Unsupervised neural network for learning embeddings of GO terms.
  ☆16Updated 3 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆18Updated 4 years ago
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆19Updated 6 years ago
• alrojo / UniLanguage
  Homology reduced UniProt, train-/valid-/testsets for language modeling
  ☆16Updated 2 years ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated last year
• i2bc / SCAN_IDR
  ☆11Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 5 months ago
• canc1993 / cheshire-gapfilling
  ☆21Updated last year
• zongmingchua / cafa5
  Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)
  ☆12Updated 10 months ago