elixir-europe / biohackathon-projects-2023

Related projects: ⓘ

• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆23Updated 4 months ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated last month
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆26Updated this week
• brsynth / rp2paths
  RetroPath2.0 to pathways
  ☆15Updated 11 months ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆24Updated 5 months ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 3 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 2 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 3 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆17Updated 2 months ago
• mmzdouc / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆29Updated last month
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆27Updated 2 years ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆32Updated 3 weeks ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• madeleineernst / pyMolNetEnhancer
  ☆18Updated last year
• siheming / mspypeline
  Package to analyze Mass Spec Data
  ☆10Updated last year
• kiharalab / GO2Sum
  GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…
  ☆10Updated 5 months ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆19Updated last year
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 4 months ago
• bittremieux / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆19Updated last year
• mandelbrot-project / memo
  Ms2 basEd saMple vectOrization (memo) package
  ☆17Updated last year
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆40Updated last week
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆43Updated last month
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆18Updated 6 years ago
• ncats / stitcher
  A stitching platform for InXight
  ☆16Updated last month
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆32Updated 2 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆16Updated 4 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 3 years ago
• biopragmatics / biomappings
  🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…
  ☆50Updated last month
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated last month