Alternatives and similar repositories for competitive-alignment

Users that are interested in competitive-alignment are comparing it to the libraries listed below

• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 11 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆18Updated 6 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 2 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 3 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 9 months ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• hitbc / gcSV
  ☆21Updated 3 months ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆13Updated last year
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆15Updated 11 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆28Updated 8 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆29Updated last month
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• ChaissonLab / danbing-tk
  Toolkit for VNTR genotyping and repeat-pan genome graph construction
  ☆25Updated this week
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆18Updated 3 weeks ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• holstegelab / MotifScope
  A tool for motif annotation and visualization in tandem repeats.
  ☆11Updated last week
• mcfrith / dnarrange
  ☆16Updated 4 months ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆11Updated last year
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated last year
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆13Updated 2 years ago