BorgwardtLab / PSTLinks
Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
☆45Updated last year
Alternatives and similar repositories for PST
Users that are interested in PST are comparing it to the libraries listed below
Sorting:
- Official repository of ReactZyme☆36Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆96Updated 10 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 9 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆120Updated last week
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆134Updated 4 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆112Updated 3 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆80Updated 5 months ago
- Official repository of EnzymeFlow☆97Updated 11 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆81Updated 6 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆78Updated 6 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆43Updated 3 weeks ago
- ☆76Updated 9 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated 11 months ago
- ☆65Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆88Updated 5 months ago
- Official implementation of "Learning the language of protein structures"☆39Updated 5 months ago
- Aligning protein generative models with experimental fitness☆111Updated last month
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated last year
- Protein structure datasets for machine learning.☆112Updated 7 months ago
- ☆71Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 7 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 4 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆99Updated 2 years ago
- ☆128Updated 5 months ago