BorgwardtLab / PSTLinks
Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
☆45Updated last year
Alternatives and similar repositories for PST
Users that are interested in PST are comparing it to the libraries listed below
Sorting:
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆120Updated 8 months ago
- Protein structure datasets for machine learning.☆112Updated 6 months ago
- Official repository of EnzymeFlow☆95Updated 11 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆95Updated 9 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- Official repository of ReactZyme☆36Updated last year
- ☆80Updated 5 months ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated 11 months ago
- Efficient implementatin of ESM family.☆76Updated 2 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆71Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆78Updated 5 months ago
- ☆57Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- ☆76Updated 8 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 3 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆111Updated 2 months ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆133Updated 3 months ago
- ☆69Updated last year
- Aligning protein generative models with experimental fitness☆110Updated 3 weeks ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 6 months ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆42Updated this week
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆110Updated 2 years ago