Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
☆46Oct 17, 2024Updated last year
Alternatives and similar repositories for PST
Users that are interested in PST are comparing it to the libraries listed below
Sorting:
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 10 months ago
- Approximate subgraph motif mining through learnable edge contraction.☆15Aug 3, 2023Updated 2 years ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 5 months ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆17Sep 10, 2024Updated last year
- Residue Level Alignment☆22Nov 21, 2024Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- ☆86May 29, 2025Updated 8 months ago
- Official Pytorch implementation of NeuralWalker (ICLR 2025)☆38Jun 25, 2025Updated 8 months ago
- Official implementation of Joint Multidimensional Scaling☆24Nov 19, 2023Updated 2 years ago
- Protein generative model conditioned on Gene Ontology terms☆35Jul 17, 2022Updated 3 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆566Nov 19, 2025Updated 3 months ago
- ☆44Jun 21, 2024Updated last year
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- ☆13Jun 5, 2024Updated last year
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆25Mar 22, 2024Updated last year
- ☆42Aug 29, 2025Updated 6 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Jan 24, 2023Updated 3 years ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆147May 29, 2025Updated 9 months ago
- ☆96Oct 15, 2024Updated last year
- ☆22Nov 6, 2024Updated last year
- Phys4DGen: A Physics-Driven Framework for Controllable and Efficient 4D Content Generation from a Single Image☆12May 10, 2025Updated 9 months ago
- ☆11Jan 3, 2024Updated 2 years ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆25May 16, 2025Updated 9 months ago
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆22Apr 24, 2024Updated last year
- Efficient implementatin of ESM family.☆80Sep 9, 2025Updated 5 months ago
- Ankh: Optimized Protein Language Model☆240Jun 16, 2025Updated 8 months ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆209Sep 30, 2025Updated 5 months ago
- ☆13Oct 19, 2023Updated 2 years ago
- Solution of KDD cup 2021☆11Jun 16, 2021Updated 4 years ago
- ☆10Jun 10, 2024Updated last year
- Protein representation and design under a single training scheme☆24Updated this week
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆200Sep 18, 2024Updated last year
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated 11 months ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆61Aug 29, 2025Updated 5 months ago
- ☆35Mar 30, 2025Updated 11 months ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- Transformer for protein function prediction☆33Oct 24, 2024Updated last year