Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
☆46Oct 17, 2024Updated last year
Alternatives and similar repositories for PST
Users that are interested in PST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Approximate subgraph motif mining through learnable edge contraction.☆15Aug 3, 2023Updated 2 years ago
- Protein structure datasets for machine learning.☆114Apr 22, 2025Updated last year
- Official implementation of Joint Multidimensional Scaling☆24Nov 19, 2023Updated 2 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction☆26Apr 24, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Official Pytorch implementation of NeuralWalker (ICLR 2025)☆39Jun 25, 2025Updated 10 months ago
- Single-sequence protein-RNA complex structure prediction with biological language models☆16Sep 23, 2025Updated 7 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆271Apr 27, 2025Updated last year
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Protein generative model conditioned on Gene Ontology terms☆34Jul 17, 2022Updated 3 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 7 months ago
- ☆10Jun 10, 2024Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆591Mar 8, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆152Apr 10, 2026Updated 2 weeks ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆26May 16, 2025Updated 11 months ago
- Ankh: Optimized Protein Language Model☆246Jun 16, 2025Updated 10 months ago
- A Python script to map PDB ID + chain ID to UniProt ID.☆18Mar 7, 2024Updated 2 years ago
- ☆92May 29, 2025Updated 11 months ago
- ☆99Oct 15, 2024Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆100Jan 24, 2023Updated 3 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆112Oct 23, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆23Nov 6, 2024Updated last year
- ☆46Jun 21, 2024Updated last year
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆79Sep 9, 2025Updated 7 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆90Dec 4, 2023Updated 2 years ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆210Sep 30, 2025Updated 7 months ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…