Alternatives and similar repositories for prot2token

Users that are interested in prot2token are comparing it to the libraries listed below

• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated 2 months ago
• Exscientia / abodybuilder3
  ☆66Updated 10 months ago
• zhengkangjie / ESM-AA
  ☆76Updated 6 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆80Updated 3 weeks ago
• programmablebio / ptm-mamba
  ☆79Updated 3 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆117Updated 5 months ago
• WeiLab-Biology / DeepProSite
  ☆34Updated last year
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆93Updated 8 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆83Updated 2 months ago
• samsledje / ConPLex_dev
  ☆52Updated last year
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆40Updated 5 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated 10 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆69Updated 2 weeks ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 3 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 11 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆118Updated 6 months ago
• DeepRank / deeprank2
  An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
  ☆54Updated 8 months ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆50Updated this week
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated last week
• moritzgls / ESM-Effect
  ☆15Updated 6 months ago
• JueWangTHU / CLAPE-SMB
  Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction
  ☆16Updated last year
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆40Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆80Updated last week
• levinthal / Pallatom
  ☆110Updated 3 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆81Updated this week