Alternatives and similar repositories for prot2token

Users that are interested in prot2token are comparing it to the libraries listed below

• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆66Updated 4 months ago
• coffee19850519 / scPEFT
  official repo for scPEFT
  ☆42Updated last month
• zhengkangjie / ESM-AA
  ☆73Updated 4 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆73Updated 5 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 6 months ago
• dahjan / DMS_opt
  ☆69Updated 4 years ago
• WeiLab-Biology / DeepProSite
  ☆33Updated last year
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆101Updated 3 months ago
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• samsledje / ConPLex_dev
  ☆49Updated last year
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆55Updated last year
• shuaizengMU / PEFT-SP
  ☆18Updated 8 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 9 months ago
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆35Updated last year
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆45Updated last year
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆39Updated last year
• programmablebio / ptm-mamba
  ☆71Updated 3 weeks ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆73Updated last month
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆22Updated 10 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated 10 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆60Updated 4 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆110Updated 4 months ago
• JueWangTHU / CLAPE-SMB
  Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction
  ☆14Updated 10 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆38Updated 6 months ago
• smiles724 / GNN-Bottleneck
  ☆39Updated last week
• Exscientia / abodybuilder3
  ☆57Updated 8 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆114Updated 3 months ago