Alternatives and similar repositories for prot2token

Users that are interested in prot2token are comparing it to the libraries listed below

• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆71Updated 2 weeks ago
• zhengkangjie / ESM-AA
  ☆76Updated 10 months ago
• WeiLab-Biology / DeepProSite
  ☆34Updated 2 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆126Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• programmablebio / ptm-mamba
  ☆84Updated 7 months ago
• Exscientia / abodybuilder3
  ☆73Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆173Updated last month
• EDAPINENUT / GeoAB
  This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)
  ☆42Updated last year
• samsledje / ConPLex_dev
  ☆54Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆91Updated 6 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆124Updated 10 months ago
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆51Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆99Updated 8 months ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆52Updated 4 months ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆34Updated last year
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆108Updated 2 months ago
• ddd9898 / DeepNano
  Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.
  ☆42Updated last year
• dahjan / DMS_opt
  ☆74Updated 5 years ago
• AspirinCode / awesome-BioMolGenFold
  RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
  ☆39Updated last month
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆79Updated 7 months ago
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆65Updated 2 years ago
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆48Updated last year
• DeepRank / deeprank2
  An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
  ☆56Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆72Updated 9 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year