Code and data for the ACL2024 paper "InstructProtein: Aligning Human and Protein Language via Knowledge Instruction".
☆23Aug 28, 2024Updated last year
Alternatives and similar repositories for InstructProtein
Users that are interested in InstructProtein are comparing it to the libraries listed below
Sorting:
- Open-Protein is an open source pre-training platform that supports multiple protein pre-training models and downstream tasks.☆19Apr 14, 2023Updated 2 years ago
- Transformer for protein function prediction☆33Oct 24, 2024Updated last year
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆18Jan 4, 2025Updated last year
- Code and Data for the paper: Graph Sampling-based Meta-Learning for Molecular Property Prediction [IJCAI2023]☆19Jun 29, 2023Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆102Jan 11, 2025Updated last year
- ☆18Jun 13, 2025Updated 9 months ago
- ☆15Nov 4, 2024Updated last year
- Code for InstructBioMol, implementing the Nature Machine Intelligence paper "Advancing Biomolecular Understanding and Design Following Hu…☆31Aug 2, 2025Updated 7 months ago
- A collection of resources related with Knowledge-augmented Graph Machine Learning for Drug Discovery.☆25Jun 28, 2024Updated last year
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆50Mar 14, 2024Updated 2 years ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆100Oct 16, 2023Updated 2 years ago
- This repo is for the Open Protein Instructions (OPI) project, aiming to build and release a high-quality and comprehensive protein instru…☆10Mar 27, 2025Updated 11 months ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆72Jul 19, 2024Updated last year
- The largest open-source dataset for Protein Single Sequence Secondary Structure prediction.☆14Dec 29, 2024Updated last year
- UPDATE: All future changes will be pushed to https://github.com/HICAI-ZJU/PromptProtein☆15Apr 23, 2023Updated 2 years ago
- ☆22Nov 6, 2024Updated last year
- ☆14Apr 15, 2024Updated last year
- Injecting watermarks to protein sequences for privacy protection in biosecurity☆10Oct 1, 2024Updated last year
- Text-guided protein design☆92Nov 12, 2025Updated 4 months ago
- Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023☆131Jun 5, 2024Updated last year
- Official implementation of "Label Poisoning is All You Need".☆11Jan 4, 2024Updated 2 years ago
- ☆41Apr 10, 2025Updated 11 months ago
- A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text☆36Oct 22, 2025Updated 4 months ago
- Pulsar: Secure Steganography for Diffusion Models☆15Oct 15, 2024Updated last year
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- 数据库大作业，简易的CRUD图书管理系统，Python☆10Jul 14, 2020Updated 5 years ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- init commit☆15Oct 31, 2023Updated 2 years ago
- ☆17Jan 29, 2026Updated last month
- Twin-deep neural network for semi-supervised learning of materials properties☆12Feb 1, 2023Updated 3 years ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆35Nov 10, 2025Updated 4 months ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆100Mar 18, 2023Updated 3 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆85May 16, 2025Updated 10 months ago
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- Source code for ACL 2024 paper: "ProtT3: Protein-to-Text Generation for Text-based Protein Understanding"☆52May 27, 2024Updated last year
- Protein function prediction using protein structures and deep graph neural networks.☆20Jan 24, 2025Updated last year
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆14Nov 1, 2023Updated 2 years ago
- ☆13Jun 5, 2024Updated last year
- Structured Chemistry Reasoning with Large Language Models☆40May 4, 2024Updated last year