HICAI-ZJU / InstructProteinLinks
Code and data for the ACL2024 paper "InstructProtein: Aligning Human and Protein Language via Knowledge Instruction".
☆22Updated 11 months ago
Alternatives and similar repositories for InstructProtein
Users that are interested in InstructProtein are comparing it to the libraries listed below
Sorting:
- A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text☆30Updated 2 months ago
- Repository for Text2Mol: Cross-Modal Molecular Retrieval with Natural Language Queries☆46Updated 4 months ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆53Updated last year
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆149Updated 4 months ago
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆220Updated 3 months ago
- [ICLR 2024] Domain-Agnostic Molecular Generation with Chemical Feedback☆172Updated 7 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- Must-read papers on NLP for science.☆58Updated 2 years ago
- The PyTorch implementation of MoMu, described in "Natural Language-informed Modeling of Molecule Graphs".☆28Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆90Updated 6 months ago
- [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models☆283Updated 9 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆49Updated last year
- Associated Repository for "Translation between Molecules and Natural Language"☆180Updated last year
- [ICML 2024] Interaction-based Retrieval-augmented Diffusion Models for Protein-specific 3D Molecule Generation☆31Updated 11 months ago
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Updated last year
- Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Profession…☆89Updated last year
- Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]☆33Updated 2 years ago
- ☆47Updated last year
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆116Updated 10 months ago
- Repository for AAAI 2024 paper "MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts"☆22Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- MSAGPT☆35Updated 8 months ago
- ☆38Updated 2 months ago
- The first large protein language model trained follows structure instructions.☆84Updated 2 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated 10 months ago
- Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…☆42Updated 10 months ago
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆11Updated last year
- SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)☆52Updated last year
- ☆10Updated last year
- ☆42Updated 2 years ago