Alternatives and similar repositories for Awesome-Biomolecule-Language-Cross-Modeling

Users that are interested in Awesome-Biomolecule-Language-Cross-Modeling are comparing it to the libraries listed below

• zjunlp / Mol-Instructions
  [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
  ☆276Updated 7 months ago
• zjunlp / MolGen
  [ICLR 2024] Domain-Agnostic Molecular Generation with Chemical Feedback
  ☆165Updated 5 months ago
• QizhiPei / BioT5
  BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)
  ☆112Updated 8 months ago
• Yijia-Xiao / Protein-LLM-Survey
  Large Language Models in Protein: A Comprehensive Survey
  ☆83Updated 2 months ago
• chao1224 / MoleculeSTM
  Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2023 (https://www.nature.com/articles/s42…
  ☆225Updated 5 months ago
• zjunlp / OntoProtein
  [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
  ☆147Updated 2 months ago
• blender-nlp / MolT5
  Associated Repository for "Translation between Molecules and Natural Language"
  ☆176Updated last year
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆97Updated last year
• lsh0520 / 3D-MoLM
  ☆46Updated last year
• HICAI-ZJU / KANO
  Code and data for the Nature Machine Intelligence paper "Knowledge graph-enhanced molecular contrastive learning with functional prompt".
  ☆122Updated last year
• ProtLLM / ProtLLM
  [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training
  ☆47Updated last year
• PKU-YuanGroup / ProLLaMA
  A Protein Large Language Model for Multi-Task Protein Language Processing
  ☆178Updated last week
• ChemFoundationModels / ChemLLMBench
  What can Large Language Models do in chemistry? A comprehensive benchmark on eight tasks
  ☆151Updated 10 months ago
• DeepGraphLearning / GearNet
  GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
  ☆290Updated last year
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆89Updated 2 years ago
• MolecularAI / Chemformer
  ☆247Updated last month
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆182Updated last month
• AlgoMole / MolCRAFT
  Official repository for MolCRAFT series
  ☆89Updated last week
• KyGao / awesome-docking
  An awesome & curated list of docking papers
  ☆111Updated 2 months ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆86Updated last year
• amorehead / awesome-molecular-generation
  Awesome papers related to generative molecular modeling and design.
  ☆325Updated 5 months ago
• hadi-abdine / Prot2Text
  ☆32Updated 8 months ago
• AI-HPC-Research-Team / GIT-Mol
  A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text
  ☆30Updated last year
• gersteinlab / GenAI4Drug
  ☆83Updated 6 months ago
• IBM / molformer
  Repository for MolFormer
  ☆312Updated 3 weeks ago
• junxia97 / Mole-BERT
  [ICLR 2023] "Mole-BERT: Rethinking Pre-training Graph Neural Networks for Molecules"
  ☆118Updated last year
• wengong-jin / RefineGNN
  ☆130Updated 2 years ago
• HICAI-ZJU / Scientific-LLM-Survey
  Scientific Large Language Models: A Survey on Biological & Chemical Domains
  ☆311Updated last month
• zjunlp / NLP4SciencePapers
  Must-read papers on NLP for science.
  ☆58Updated last year
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆80Updated 4 months ago