[COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language prompts. It considers a signaling pathway as a protein reasoning process, which starts from upstream proteins and passes through several intermediate proteins to transmit biological signals to downstream proteins.
☆73Nov 23, 2025Updated 8 months ago
Alternatives and similar repositories for ProLLM
Users that are interested in ProLLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [ICONIP'24]Mingyu.Jin's final year project☆30Aug 23, 2024Updated last year
- [ICML'25] Our study systematically investigates massive values in LLMs' attention mechanisms. First, we observe massive values are concen…☆87Jun 20, 2025Updated last year
- [preprint] sparsity☆22May 6, 2026Updated 2 months ago
- [ACL'24] Chain of Thought (CoT) is significant in improving the reasoning abilities of large language models (LLMs). However, the correla…☆47May 11, 2025Updated last year
- VAEGAN, I Love u☆16Aug 15, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- [EACL'26] DeepSieve: Information Sieving via LLM-as-a-Knowledge-Router☆107Jan 4, 2026Updated 6 months ago
- [FCS'24] LVLM Safety paper☆19Jan 4, 2025Updated last year
- MSWAL☆15Nov 7, 2025Updated 8 months ago
- [COLING'25] Exploring Concept Depth: How Large Language Models Acquire Knowledge at Different Layers?☆82Jan 22, 2025Updated last year
- Official repo of M$^2$PT: Multimodal Prompt Tuning for Zero-shot Instruction Learning☆29Mar 23, 2025Updated last year
- [KDD 2026] Chem-R: Learning to Reason as a Chemist☆30Oct 19, 2025Updated 9 months ago
- Serializing molecule 3D structures☆14Nov 27, 2024Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- ☆15Jan 19, 2026Updated 6 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆51Jun 5, 2025Updated last year
- Structure-Informed Protein Language Model☆39Feb 15, 2024Updated 2 years ago
- The code for paper "EPO: Entropy-regularized Policy Optimization for LLM Agents Reinforcement Learning"☆40Jul 13, 2026Updated last week
- ☆10Jun 28, 2025Updated last year
- ☆42Jun 3, 2025Updated last year
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated 11 months ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆207Sep 30, 2025Updated 9 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆51Mar 14, 2024Updated 2 years ago
- ☆43Sep 24, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆39Jun 9, 2025Updated last year
- ☆24Nov 6, 2024Updated last year
- ☆23Mar 2, 2025Updated last year
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆115Oct 23, 2023Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆85May 27, 2026Updated last month
- 3D-MolT5: Leveraging Discrete Structural Information for Molecule-Text Modeling (ICLR 2025)☆19Oct 23, 2025Updated 9 months ago
- POLYGON VAE For de novo Polypharmacology☆43Mar 5, 2025Updated last year
- ☆40Jan 26, 2026Updated 5 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆613Mar 8, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Demonstration Agents for AIOS☆19Dec 25, 2024Updated last year
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆24Jun 30, 2026Updated 3 weeks ago
- ☆23Feb 3, 2026Updated 5 months ago
- ☆33Jul 7, 2026Updated 2 weeks ago
- The code for paper "MemGym: a Long-Horizon Memory Environment for LLM Agents".☆18Jun 2, 2026Updated last month
- ☆22Mar 30, 2024Updated 2 years ago
- Input files and binding free energy values from our benchmark with QuantumBind-RBFE☆16Apr 16, 2025Updated last year