Source code for ACL 2024 paper: "ProtT3: Protein-to-Text Generation for Text-based Protein Understanding"
☆52May 27, 2024Updated last year
Alternatives and similar repositories for ProtT3
Users that are interested in ProtT3 are comparing it to the libraries listed below
Sorting:
- ☆39Jun 9, 2025Updated 8 months ago
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆12Dec 27, 2023Updated 2 years ago
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated 8 months ago
- This is the official code for MolReasoner: Toward Effective and Interpretable Reasoning for Molecular LLMs☆44Aug 28, 2025Updated 6 months ago
- Diffusion-based generative drug-like molecular editing with chemical natural language☆18Dec 22, 2024Updated last year
- This repository contains information on the creation, evaluation, and benchmark models for the L+M-24 Dataset. L+M-24 will be featured as…☆30Jan 23, 2025Updated last year
- The first large protein language model trained follows structure instructions.☆94May 20, 2025Updated 9 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆50Mar 14, 2024Updated last year
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆84Feb 25, 2024Updated 2 years ago
- ☆21Feb 3, 2026Updated 3 weeks ago
- Code and data for the ACL2024 paper "InstructProtein: Aligning Human and Protein Language via Knowledge Instruction".☆23Aug 28, 2024Updated last year
- Prot2Text-V2: Protein Function Prediction with Multimodal Contrastive Alignment☆39Oct 23, 2025Updated 4 months ago
- [EMNLP 2023] ReLM: Leveraging Language Models for Enhanced Chemical Reaction Prediction.☆22Jan 28, 2024Updated 2 years ago
- [ACL 2024] ReactXT: Understanding Molecular “Reaction-ship” via Reaction-Contextualized Molecule-Text Pretraining. by Zhiyuan Liu*, Yaoru…☆27Sep 3, 2024Updated last year
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆14Jul 8, 2025Updated 7 months ago
- Autoregressive fragment-based diffusion for target-aware ligand design☆32May 23, 2024Updated last year
- PRESTO: Progressive Pretraining Enhances Synthetic Chemistry Outcomes [EMNLP 2024]☆28Nov 18, 2024Updated last year
- ☆53Apr 19, 2024Updated last year
- ☆28Jan 7, 2025Updated last year
- A toolkit to automatically crawl the paper list and download paper pdfs of ACL Ahthology.☆10Nov 12, 2025Updated 3 months ago
- ☆17Dec 23, 2024Updated last year
- ☆12Jul 2, 2025Updated 7 months ago
- Baseline model for PPB-Affinity benchmark data☆35May 21, 2025Updated 9 months ago
- Official Implementation (Pytorch) of the "LLaMo: Large Language Model-based Molecular Graph Assistant", NeurIPS 2024☆33Feb 12, 2025Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82May 16, 2025Updated 9 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆101Jan 11, 2025Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- ☆15Feb 18, 2026Updated last week
- A collection of AWESOME things about LLM-Centric-Molecular-Discovery.☆23May 20, 2025Updated 9 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 5 months ago
- Contrastive learning harmonizing protein language models and natural language models☆39Jun 12, 2024Updated last year
- ☆40Jun 3, 2025Updated 8 months ago
- DrugGen: Advancing Drug Discovery with Large Language Models and Reinforcement Learning Feedback☆21May 22, 2025Updated 9 months ago
- ☆20Aug 25, 2025Updated 6 months ago
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆21Oct 31, 2025Updated 4 months ago
- Serializing molecule 3D structures☆14Nov 27, 2024Updated last year
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆209Sep 30, 2025Updated 5 months ago
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆41Nov 20, 2025Updated 3 months ago