Tutorial on large language models for genomics
☆283Jun 5, 2025Updated last year
Alternatives and similar repositories for LLM-for-genomics-training
Users that are interested in LLM-for-genomics-training are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training on CNN and basic ML for genomics☆30Sep 22, 2025Updated 10 months ago
- Phase 2 repo for the Inserm Workshop on Machine Learning in Biology☆19Dec 17, 2025Updated 7 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…☆509Dec 26, 2025Updated 7 months ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆23Updated this week
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆14Apr 28, 2026Updated 3 months ago
- A collection of resources for learning about tools and programming languages related to Bioinformatics☆201Jul 20, 2022Updated 4 years ago
- AWS for Bioinformatics Researchers☆195Jul 17, 2025Updated last year
- MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)☆15Jul 13, 2026Updated 2 weeks ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- Python Fundamentals for Biologists☆42Nov 15, 2024Updated last year
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆152Jul 10, 2026Updated 2 weeks ago
- R Fundamentals for Biologists☆33Jan 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains math tutorials I created for Bioinformatics and Computational Biology.☆97Aug 26, 2024Updated last year
- This repo is mainly for beginners to intermediate level ML/Bioiniformatics engineers/students/enthusiasts. It mainly focus on creating a …☆15Dec 28, 2024Updated last year
- Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.☆138Mar 19, 2026Updated 4 months ago
- Machine Learning for Genomics Course.☆22Feb 15, 2023Updated 3 years ago
- An experimental AI agent workflow.☆16Oct 11, 2025Updated 9 months ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago
- ☆29Dec 15, 2025Updated 7 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated 11 months ago
- Large language model Mistral for DNA☆24Sep 12, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.☆1,058Updated this week
- ☆12Apr 1, 2025Updated last year
- The Bioinformatician’s Interactive Lab Notebook (BILN) is a smart, dynamic system for tracking experiments, datasets, and workflows. Desi…☆57May 19, 2026Updated 2 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆334Jun 12, 2026Updated last month
- resources for learning bioinformatics☆1,596Jan 8, 2025Updated last year
- ☆19Apr 20, 2025Updated last year
- I am sharing my code repository to understand the working and principle of working of various BioInformatics code in Python☆30Oct 2, 2025Updated 9 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆53Jul 10, 2026Updated 2 weeks ago
- This repo collects the list of learning online resources related to microbiome computational science and tools.☆105Mar 11, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique s…☆89Dec 28, 2025Updated 7 months ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆54Jun 5, 2026Updated last month
- Danny Ma's 8 Week SQL Challenge Best Solutions on the Internet☆16Sep 20, 2024Updated last year
- Exploring mutual features between the 5xFAD, 3xTG-AD, and PS3O1S Alzheimer's Disease Mouse Models☆12Jan 10, 2025Updated last year
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Assorted ML tutorials that I originally wrote for Decoding Biology☆14Aug 18, 2024Updated last year
- Retrieve and summarize bioRxiv preprints with a local LLM using ollama☆74Sep 27, 2024Updated last year