Python implementation of TEISER also capable of using SHAPE structural probing data
☆12Jan 7, 2025Updated last year
Alternatives and similar repositories for pyteiser
Users that are interested in pyteiser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Jul 16, 2024Updated last year
- python implementation of the PAGE algorithm☆21Feb 15, 2026Updated last month
- Interpretable splicing model☆23Jun 14, 2023Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆47Mar 9, 2026Updated 2 weeks ago
- Flexible analysis of high-content CRISPR screening☆32Mar 6, 2026Updated 2 weeks ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated 11 months ago
- ☆16Oct 19, 2024Updated last year
- cgat-flow repository☆16Sep 23, 2025Updated 6 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- ☆12Jun 16, 2025Updated 9 months ago
- Simurai’s site as a Harp boilerplate.☆21Dec 11, 2015Updated 10 years ago
- A python library for checking if an email is issued by an academic institution. Useful for granting discounts, etc to academic users.☆15Feb 16, 2016Updated 10 years ago
- An official implementation of Cl-InfoNCE☆14Feb 14, 2022Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Aug 29, 2025Updated 6 months ago
- Makes distinct TSS of each gene from a Gencode annotation☆10Oct 19, 2016Updated 9 years ago
- Comprehensive survival analyses on the TCGA data.☆17Jun 10, 2022Updated 3 years ago
- Spliced read mapper for RNA-Seq☆21May 24, 2018Updated 7 years ago
- ☆15Nov 29, 2020Updated 5 years ago
- ☆13May 16, 2021Updated 4 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Aug 13, 2024Updated last year
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- Prediction pipeline to generate prognosis predictors for Ebola Virus Disease☆12Feb 22, 2016Updated 10 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Jul 2, 2024Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- ☆12Aug 6, 2025Updated 7 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆58Jul 3, 2019Updated 6 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆27Jan 29, 2026Updated last month
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Taiga for Dataset management☆12Feb 5, 2026Updated last month
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆11Nov 8, 2025Updated 4 months ago
- A concise implementation of SimCSE☆16Aug 2, 2021Updated 4 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆15Feb 10, 2026Updated last month