Scalable inference of gene regulatory networks using Apache Spark and XGBoost
☆20Feb 8, 2018Updated 8 years ago
Alternatives and similar repositories for GRNBoost
Users that are interested in GRNBoost are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆37Apr 5, 2022Updated 4 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆67Apr 5, 2024Updated 2 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆48Dec 12, 2019Updated 6 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆34Mar 26, 2026Updated last month
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated 9 months ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 2 months ago
- 基于pyqt和python-vlc开发的播放器demo，可以对阿里云视频直播进行监测☆10Mar 25, 2021Updated 5 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 5 months ago
- (EMBC 2020) Camera-based Hand Tracking using a Mirror-based Multi-view Setup☆15Dec 11, 2021Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Apr 28, 2026Updated last week
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An R/C++ implementation of the Growing Neural Gas algorithm☆12Mar 29, 2021Updated 5 years ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated last year
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 7 months ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 7 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 3 weeks ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- apa: research platform for the study of alternative polyadenylation, expressRNA.org☆12Sep 2, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for processing and analyzing structural variants.☆34Sep 8, 2015Updated 10 years ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆102Sep 24, 2021Updated 4 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- Learning Deep Representations for Graph Clustering Implementation☆20Apr 25, 2019Updated 7 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- ☆13Apr 27, 2026Updated last week
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 3 years ago
- Code sharing related to DREAM challenges☆23Feb 21, 2017Updated 9 years ago
- a clever bot to rate and improve your ggplot plot √☆12Jan 12, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Apr 20, 2026Updated 2 weeks ago
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- New home of the Covid19-NP-Swab NP-swab manufacturing project☆16Jul 24, 2020Updated 5 years ago
- ☆14Oct 27, 2025Updated 6 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Oct 8, 2024Updated last year
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 3 years ago