aertslab / GRNBoost
Scalable inference of gene regulatory networks using Apache Spark and XGBoost
☆19Updated 7 years ago
Alternatives and similar repositories for GRNBoost:
Users that are interested in GRNBoost are comparing it to the libraries listed below
- ☆37Updated 8 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆55Updated 10 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆81Updated 5 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- ☆38Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆56Updated 2 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆41Updated 3 months ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- ☆57Updated 5 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Fast motif matching in R☆45Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- ☆35Updated 11 months ago
- ☆42Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆70Updated 9 months ago
- ☆28Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 5 months ago
- ☆58Updated 3 years ago
- Explore and download data from the recount3 project☆33Updated 2 months ago
- scWGCNA☆56Updated 2 years ago
- An R-based interface for loom files☆66Updated 4 years ago