Scalable inference of gene regulatory networks using Apache Spark and XGBoost
☆20Feb 8, 2018Updated 8 years ago
Alternatives and similar repositories for GRNBoost
Users that are interested in GRNBoost are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆38Apr 5, 2022Updated 4 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆48Dec 12, 2019Updated 6 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆33Mar 26, 2026Updated 2 weeks ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- AR1MA1 - VBEM reverse engineering GRNs method☆11Sep 26, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated 9 months ago
- 基于pyqt和python-vlc开发的播放器demo,可以对阿里云视频直播进行监测☆10Mar 25, 2021Updated 5 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 4 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 30, 2026Updated 2 weeks ago
- An R/C++ implementation of the Growing Neural Gas algorithm☆12Mar 29, 2021Updated 5 years ago
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated last year
- Software for analyzing high dimensional dose-response data☆19Mar 18, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- RNA-binding protein motif analysis☆10Sep 29, 2025Updated 6 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- Machine learning-based approach for the inference of gene regulatory networks from expression data.☆102Sep 24, 2021Updated 4 years ago
- Learning Deep Representations for Graph Clustering Implementation☆20Apr 25, 2019Updated 6 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Aug 5, 2022Updated 3 years ago
- Code sharing related to DREAM challenges☆23Feb 21, 2017Updated 9 years ago
- a clever bot to rate and improve your ggplot plot √☆13Jan 12, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Mar 31, 2026Updated 2 weeks ago
- ☆14Oct 27, 2025Updated 5 months ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 3 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- Fast motif matching in R☆47Jan 24, 2024Updated 2 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- ☆14Apr 17, 2025Updated 11 months ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12May 13, 2024Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated 10 months ago
- A collection of scripts for common data management and processing tasks☆10Jan 2, 2024Updated 2 years ago
- Construction of small-world, scale-free networks☆16Mar 16, 2017Updated 9 years ago
- Tools for crop simulations with Aquacrop V6☆11Dec 2, 2022Updated 3 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 6 years ago
- ☆19Mar 31, 2023Updated 3 years ago