nickp60 / fcidLinks
☆21Updated 2 months ago
Alternatives and similar repositories for fcid
Users that are interested in fcid are comparing it to the libraries listed below
Sorting:
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 2 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Simple pileup-based variant caller☆91Updated 4 months ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆79Updated last week
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- ☆35Updated 2 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- k-mer learning materials☆74Updated 6 months ago
- A local-haplotagging-based small and structural variant caller☆79Updated 3 weeks ago
- ☆49Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- python plotly Circos from VCF☆38Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- ☆28Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- Compute N50/NG50 and auN/auNG☆32Updated last year