jizhang-nz / fast-GePLinks
Fast genealogical relationship evaluation of bacterial isolates with WGS data.
☆12Updated 3 years ago
Alternatives and similar repositories for fast-GeP
Users that are interested in fast-GeP are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆29Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- Gene Absence Presence Identification tool.☆26Updated 3 months ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- ☆20Updated 9 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- SeqSero2☆36Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- ☆36Updated 3 years ago
- whole genome MLST analysis☆43Updated 2 weeks ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Discover and annotate the virome☆43Updated 2 months ago