☆34Dec 2, 2020Updated 5 years ago
Alternatives and similar repositories for MetaPhlAn2
Users that are interested in MetaPhlAn2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆413Jun 8, 2026Updated 3 weeks ago
- ☆23May 16, 2020Updated 6 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated 2 months ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- Biobakery formulae for the Homebrew package manager☆11Sep 9, 2019Updated 6 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Snakemake workflow to generate OTU tables from barcoded ONT data☆21May 8, 2026Updated last month
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 4 months ago
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆18Jun 4, 2026Updated last month
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆151Dec 17, 2025Updated 6 months ago
- ☆16Apr 10, 2023Updated 3 years ago
- ☆14Mar 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Trimming tool for Oxford Nanopore sequence data☆22Jun 22, 2021Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- Docker for Bioinformatics☆20Mar 27, 2026Updated 3 months ago
- The second version of the Kraken taxonomic sequence classification system☆918Jun 24, 2026Updated last week
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆527Updated this week
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆14Nov 8, 2017Updated 8 years ago
- Metagenome analysis using the Kraken software suite☆38Sep 29, 2022Updated 3 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆129Jun 1, 2026Updated last month
- ☆12Dec 22, 2025Updated 6 months ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 9 months ago
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- 🌈 Interactive analysis of metagenomics data☆453Sep 17, 2025Updated 9 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- Extended tools for correlation analysis and visualization.☆46Mar 19, 2020Updated 6 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- Interactively explore metagenomes and more from a web browser.☆501Dec 22, 2021Updated 4 years ago