biobakery / MetaPhlAn2Links
☆34Updated 5 years ago
Alternatives and similar repositories for MetaPhlAn2
Users that are interested in MetaPhlAn2 are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆123Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- REference Sequence annotation and CuRatIon Pipeline☆98Updated 2 weeks ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Course material for the metagenomics course☆47Updated 3 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Updated 3 months ago
- ☆58Updated last year
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- MEGAN Community Edition☆72Updated last year
- gutSMASH☆57Updated 3 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆90Updated 6 months ago
- Bioinformatics Tools☆90Updated this week
- An R package designed for drawing gene arrow maps☆95Updated 3 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆95Updated last year
- Rapid and scalable correlation estimation for compositional data☆96Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆166Updated last month
- Making whole bacterial genome sequencing data analysis easy☆114Updated 8 months ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- ☆87Updated last year
- Woltka: a versatile meta'omic data classifier☆76Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last month
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 11 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago