biobakery / MetaPhlAn2Links
☆32Updated 4 years ago
Alternatives and similar repositories for MetaPhlAn2
Users that are interested in MetaPhlAn2 are comparing it to the libraries listed below
Sorting:
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- An R package designed for drawing gene arrow maps☆79Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- gutSMASH☆54Updated 6 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆88Updated last week
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- ☆56Updated last year
- Woltka: a versatile meta'omic data classifier☆74Updated 3 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- ☆72Updated last month
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 10 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- CLI tool to annotate genes with KOfam☆80Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆75Updated 3 weeks ago
- MGnify genome analysis pipeline☆106Updated last week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 10 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 weeks ago
- Supporting code for uncultivated gut virus manuscript☆72Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆77Updated 4 months ago
- Scripts and libraries for Environmental Genomics☆38Updated 4 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- ☆82Updated last year
- Metatranscriptomics Tutorial☆62Updated last year
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated last year