☆34Dec 2, 2020Updated 5 years ago
Alternatives and similar repositories for MetaPhlAn2
Users that are interested in MetaPhlAn2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆429Oct 13, 2026Updated 3 weeks ago
- CRISPRDetect: A flexible algorithm to define CRISPR arrays☆11Jan 20, 2022Updated 4 years ago
- ☆23May 16, 2020Updated 6 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- bioBakery tools for meta'omic profiling☆326Aug 4, 2026Updated 2 months ago
- ☆12Aug 17, 2024Updated 2 years ago
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated 2 years ago
- viralVerify: viral contig verification tool☆79Feb 19, 2026Updated 8 months ago
- ☆16Feb 13, 2026Updated 8 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆156Oct 15, 2026Updated 2 weeks ago
- Biobakery formulae for the Homebrew package manager☆11Sep 9, 2019Updated 7 years ago
- A compositional bias testing and pruning tool for multiple sequence alignments☆13Jun 16, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- EvoMotif automates the discovery of evolutionarily conserved protein motifs by combining information theory, evolutionary substitution ma…☆12Dec 23, 2025Updated 10 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆36Oct 17, 2023Updated 3 years ago
- strain-level analysis tools☆41Oct 21, 2024Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆950Updated this week
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆15Aug 22, 2026Updated 2 months ago
- ☆16Apr 10, 2023Updated 3 years ago
- A comprehensive prokaryotic genome annotation pipeline☆92Oct 12, 2026Updated 3 weeks ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆533Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automatically exported from code.google.com/p/qsimscan☆14Updated this week
- Interactively explore metagenomes and more from a web browser.☆503Dec 22, 2021Updated 4 years ago
- 🌈 Interactive analysis of metagenomics data☆456Sep 17, 2025Updated last year
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- ☆14Mar 8, 2021Updated 5 years ago
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆89Feb 26, 2026Updated 8 months ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Mar 29, 2024Updated 2 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆15Nov 8, 2017Updated 8 years ago
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆22Jun 4, 2026Updated 4 months ago
- A web app to view and analyze single cell RNAseq data with Seurat☆10Mar 25, 2023Updated 3 years ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated 2 years ago
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 5 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆43Apr 13, 2021Updated 5 years ago