biobakery / MetaPhlAn2
☆29Updated 3 years ago
Related projects: ⓘ
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- Simple bacterial assembly and annotation pipeline☆60Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- gutSMASH☆51Updated 4 months ago
- A general metagenomics data mining system focus on robust microbiome research☆55Updated last week
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated 5 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆52Updated 3 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆68Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆54Updated 3 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆54Updated 5 months ago
- Microbiome classification pipeline☆63Updated 5 months ago
- Metagenomics-related extended functionalities to samtools☆18Updated last year
- Statistical analysis for sparse high-throughput sequencing☆65Updated 6 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆107Updated 4 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆41Updated 11 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆96Updated 8 months ago
- ☆42Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 3 years ago
- Course material for the metagenomics course☆42Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆14Updated 11 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆136Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆55Updated this week
- web documentation for Trinotate☆47Updated last year
- Bacterial Genome Assembly and Assessment☆22Updated 2 months ago
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆18Updated last week
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago