In-house computational biology workflows at Columbia Neurology
☆36Sep 7, 2025Updated last year
Alternatives and similar repositories for bioworkflows
Users that are interested in bioworkflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆25Apr 25, 2023Updated 3 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆56Sep 28, 2026Updated last week
- Statistical tools for Quantitative Genetic Analyses☆41Apr 16, 2026Updated 5 months ago
- ☆21Nov 15, 2024Updated last year
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for our paper "Genetic architecture and lifetime dynamics of inbreeding depression in a wild mammal."☆14Sep 24, 2024Updated 2 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated 2 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated 6 months ago
- Read PLINK BED/BIM/FAM files into R☆44Jul 26, 2021Updated 5 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- software package for integrative genetic association analysis☆38Jul 8, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆22Aug 19, 2025Updated last year
- ☆13Jan 30, 2025Updated last year
- A Fine-Mapping pipeline☆23Sep 13, 2019Updated 7 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆47Mar 16, 2026Updated 6 months ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆36Jun 17, 2025Updated last year
- Statistical fine-mapping pipeline in FinnGen☆35Aug 14, 2026Updated last month
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆64Sep 26, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆14Feb 14, 2024Updated 2 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆50Dec 16, 2024Updated last year
- GTEx analysis scripts☆20Mar 14, 2017Updated 9 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated 2 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 4 years ago
- Example jobs for popular applications on HCC clusters.☆21Sep 23, 2026Updated 2 weeks ago
- ☆68Dec 30, 2021Updated 4 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Sep 7, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Primo☆16Sep 2, 2021Updated 5 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Oct 2, 2026Updated last week
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- My computational biology course as it evolves in real time☆14Aug 31, 2021Updated 5 years ago
- Mediated Expression Score Regression (MESC)☆30Nov 4, 2025Updated 11 months ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 6 months ago