psoerensen / qggLinks
Statistical tools for Quantitative Genetic Analyses
☆38Updated this week
Alternatives and similar repositories for qgg
Users that are interested in qgg are comparing it to the libraries listed below
Sorting:
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 10 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated last month
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- Make LocusZoom-like plots with your own LD matrix.☆48Updated 3 years ago
- Manhattan++☆28Updated last year
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 3 months ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆97Updated 11 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 7 months ago
- Sequence kernel association test (SKAT)☆54Updated 5 months ago
- Quality control steps for GWAS☆26Updated 2 years ago
- ☆16Updated 5 years ago
- Colocalization analysis of genetic association signals☆53Updated 7 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- QTL Discovery using Annotations☆28Updated 3 years ago
- ☆63Updated 4 years ago
- Scripts for implementing the Tractor pipeline☆53Updated 4 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated last week
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆43Updated 3 years ago
- Generalized linear Mixed Model Association Tests☆44Updated 2 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Updated 6 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Updated last year
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Cross-population fine-mapping☆41Updated last year
- Analyses conducting GWAS across the UKBB diverse superpopulations☆62Updated 3 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆90Updated 2 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆35Updated 5 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆56Updated 4 months ago
- A tool to plot significant regions of GWAS☆29Updated 3 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Updated 7 months ago
- GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis☆30Updated 5 years ago