turrogroup / rsvrLinks
Rareservoir Database Tools
☆16Updated 2 years ago
Alternatives and similar repositories for rsvr
Users that are interested in rsvr are comparing it to the libraries listed below
Sorting:
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆69Updated 9 months ago
- Comprehensive analysis of small RNA sequencing data☆34Updated 8 months ago
- ☆22Updated last month
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 4 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆54Updated 3 months ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 11 months ago
- VEP Plugin to annotate high-impact five prime UTR variants☆28Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆13Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆31Updated last year
- ☆38Updated 5 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Updated 3 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 7 months ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- ☆13Updated 8 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆72Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- Assign gene names to regions in a BED file☆25Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago