ga4gh / ga4gh-server
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
☆98Updated 7 years ago
Alternatives and similar repositories for ga4gh-server:
Users that are interested in ga4gh-server are comparing it to the libraries listed below
- Models and APIs for Genomic data. RETIRED 2018-01-24☆218Updated 2 years ago
- GA4GH Variation Representation Python Implementation☆53Updated this week
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆122Updated 5 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆87Updated this week
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- HGVS variant name parsing and generation☆174Updated last year
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- A powerful toolset for genome arithmetic.☆141Updated 3 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated 2 weeks ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- NGS Language Bindings☆119Updated last year
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- GenomicsDB☆111Updated 2 years ago
- ☆174Updated last year
- Server wrapper that turns command line tools into web services☆61Updated 6 years ago
- Library for manipulating genomic variants and predicting their effects☆84Updated 8 months ago
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago
- VarDict Java port☆133Updated last year
- MuTect -- Accurate and sensitive cancer mutation detection☆96Updated 2 years ago
- HGVS variant nomenclature checker☆98Updated last year
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- Interactive web-based genome browser.☆227Updated 5 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆63Updated last month
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago