Alternatives and similar repositories for ga4gh-server

Users that are interested in ga4gh-server are comparing it to the libraries listed below

• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆86Updated 8 years ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• ga4gh / ga4gh-schemas
  Models and APIs for Genomic data. RETIRED 2018-01-24
  ☆220Updated 3 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆128Updated 5 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated 2 weeks ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆96Updated 3 months ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated 2 months ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated this week
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 5 years ago
• arq5x / gemini
  a lightweight db framework for exploring genetic variation.
  ☆323Updated 5 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆80Updated 2 weeks ago
• ryanlayer / gqt
  A genotype query interface.
  ☆136Updated 4 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆110Updated 2 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆203Updated 4 years ago
• counsyl / hgvs
  HGVS variant name parsing and generation
  ☆176Updated 2 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆120Updated 2 years ago
• genome / gms
  The Genome Modeling System installer
  ☆78Updated 10 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Updated 6 years ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 3 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated 2 weeks ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 3 weeks ago
• CCDG / Pipeline-Standardization
  ☆82Updated 7 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• broadinstitute / gatk-protected
  Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
  ☆32Updated 8 years ago
• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago