ga4gh / ga4gh-serverLinks
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
☆98Updated 7 years ago
Alternatives and similar repositories for ga4gh-server
Users that are interested in ga4gh-server are comparing it to the libraries listed below
Sorting:
- Browser for ExAC consortium data☆106Updated 3 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- GA4GH Variation Representation Python Implementation☆60Updated 3 weeks ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆93Updated last month
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆219Updated 2 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated 2 weeks ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆126Updated 5 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- C++ Library to parse Illumina InterOp files☆79Updated 3 months ago
- A genotype query interface.☆136Updated 4 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- A tool set for short variant discovery in genetic sequence data.☆201Updated 4 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆62Updated last month
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆128Updated 6 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- MyVariant.info: A BioThings API for human variant annotations☆95Updated last week
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆83Updated last month
- a lightweight db framework for exploring genetic variation.☆322Updated 5 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆166Updated last year
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated 3 weeks ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- ☆82Updated 6 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆89Updated 11 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- NGS Language Bindings☆119Updated last year
- The Genome Modeling System installer☆78Updated 10 years ago