Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
☆99Jan 24, 2018Updated 8 years ago
Alternatives and similar repositories for ga4gh-server
Users that are interested in ga4gh-server are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Models and APIs for Genomic data. RETIRED 2018-01-24☆221Oct 28, 2022Updated 3 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- Documentation for the MatchmakerExchange APIs☆34Feb 24, 2026Updated 3 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- GA4GH Beacon specification.☆33Jan 25, 2023Updated 3 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Mar 11, 2019Updated 7 years ago
- a place for GA4GH-related wiki pages☆17Aug 3, 2017Updated 8 years ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- Curated collection of open-source bioinformatics tools☆28Feb 5, 2019Updated 7 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")☆41Feb 12, 2026Updated 3 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Image and VM management for Jenkins, Spark and Mesos clusters in EC2☆22Jul 24, 2020Updated 5 years ago
- lightning☆11Oct 20, 2015Updated 10 years ago
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- Elixir Beacon Reference Implementation. Latest release is compliant with v1.1.0 of the specification.☆14Jun 19, 2020Updated 5 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated last month
- Variant Calling for the HPRC2☆15Updated this week
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Interactive in-browser track viewer☆281Oct 26, 2021Updated 4 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- A repository for version control of consortium data model(s)☆17May 13, 2026Updated 2 weeks ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆931May 21, 2026Updated last week
- ☆13Jun 21, 2017Updated 8 years ago
- Examples for the Google Genomics Pipelines API.☆50Dec 15, 2017Updated 8 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 8 years ago
- An app store for scientific workflows, tools, notebooks, and services☆130May 23, 2026Updated last week
- ☆93Feb 25, 2026Updated 3 months ago
- ☆30Oct 6, 2021Updated 4 years ago
- tools for working with genome variation graphs☆1,320Updated this week
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Mar 5, 2026Updated 2 months ago
- BWT-based index for graphs☆73Mar 12, 2025Updated last year