Alternatives and similar repositories for genewalk

Users that are interested in genewalk are comparing it to the libraries listed below

• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆153Updated this week
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆62Updated last year
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆125Updated 2 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 5 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 6 months ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆145Updated 3 weeks ago
• baryshnikova-lab / safepy
  Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
  ☆45Updated 2 months ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆62Updated 2 weeks ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆97Updated 4 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated this week
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated 2 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆122Updated 8 months ago
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated last year
• hbc / NGS_Data_Analysis_Course
  ☆23Updated 9 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• pachterlab / kb_python
  A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
  ☆178Updated 3 weeks ago
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆122Updated last month
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆95Updated 10 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆132Updated 9 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆123Updated 2 months ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆233Updated last month
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆67Updated 2 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆109Updated last month
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• crazyhottommy / machine-learning-resource
  ☆83Updated 11 months ago