churchmanlab / genewalk
GeneWalk identifies relevant gene functions for a biological context using network representation learning
☆130Updated 6 months ago
Alternatives and similar repositories for genewalk:
Users that are interested in genewalk are comparing it to the libraries listed below
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆117Updated 2 years ago
- Python biomart API☆65Updated last year
- ☆31Updated 3 years ago
- R package to access DoRothEA's regulons☆142Updated 11 months ago
- Alternative splicing resource☆52Updated 6 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- A continually expanding collection of cancer genomics notes and data☆102Updated 3 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆82Updated 3 years ago
- An R interface to enrichR☆88Updated 2 weeks ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆159Updated 4 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆100Updated 3 months ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆134Updated this week
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆213Updated 2 weeks ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆114Updated last week
- bioinformatics plotting and tools☆55Updated 8 months ago
- A Python implementation of edgeR for differential expression analysis☆100Updated 5 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆91Updated 4 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆133Updated 8 months ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆226Updated last week
- ☆23Updated 8 years ago
- Porting DESeq2 into python via rpy2☆68Updated last year
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆126Updated last year
- ☆77Updated 2 months ago
- muon is a multimodal omics Python framework☆226Updated 3 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆142Updated 2 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆138Updated this week
- coding exercise using TCGA immune infiltration data☆44Updated last year
- ☆64Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆115Updated last year