GeneWalk identifies relevant gene functions for a biological context using network representation learning
☆134Aug 1, 2024Updated last year
Alternatives and similar repositories for genewalk
Users that are interested in genewalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- functional genomic data integration☆10Sep 22, 2019Updated 6 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 3 years ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Functional enrichment analysis of high-throughput omics data☆20Jan 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆72Updated this week
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Statistical power studies for multi-omics experiments.☆33Jan 18, 2025Updated last year
- ☆17May 15, 2024Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 4 months ago
- COMET Single-Cell Marker Detection tool☆34Jun 21, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 4 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 10 months ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 2 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- python module to plot beautiful and highly customizable genome browser tracks☆884Jul 10, 2024Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 7 months ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆25Feb 13, 2021Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- Multi-sample transcriptome assembly from RNA-Seq☆25Jun 10, 2018Updated 7 years ago
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- scover☆23Nov 3, 2023Updated 2 years ago
- ☆14May 26, 2020Updated 5 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- Prize-Collecting Steiner Forests for Interactomes☆63Jun 18, 2024Updated last year
- Predicting gene expression levels from genomic sequences☆54Jun 24, 2020Updated 5 years ago
- A script to make downloading of SRA/GEO data easier☆33Oct 6, 2023Updated 2 years ago