churchmanlab / genewalk
GeneWalk identifies relevant gene functions for a biological context using network representation learning
☆130Updated 7 months ago
Alternatives and similar repositories for genewalk:
Users that are interested in genewalk are comparing it to the libraries listed below
- Python biomart API☆65Updated last year
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆138Updated this week
- R package to access DoRothEA's regulons☆142Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆91Updated 4 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆117Updated 2 years ago
- Porting DESeq2 into python via rpy2☆68Updated last year
- What you need to process the Quarterly DepMap-Omics releases from Terra☆114Updated this week
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- coding exercise using TCGA immune infiltration data☆44Updated last year
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆134Updated 10 months ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆41Updated last week
- Python package to perform enrichment analysis from omics data.☆183Updated last month
- ☆32Updated 3 years ago
- MOODS: Motif Occurrence Detection Suite☆96Updated last year
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆135Updated last week
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆160Updated 5 months ago
- bioinformatics plotting and tools☆56Updated 9 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆142Updated 3 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆216Updated this week
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆100Updated 2 years ago
- ☆23Updated 8 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆60Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆127Updated last month
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆126Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆82Updated 3 years ago
- A continually expanding collection of cancer genomics notes and data☆102Updated 4 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆115Updated last year
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆219Updated 3 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆72Updated 8 months ago