churchmanlab / genewalk
GeneWalk identifies relevant gene functions for a biological context using network representation learning
☆131Updated 9 months ago
Alternatives and similar repositories for genewalk:
Users that are interested in genewalk are comparing it to the libraries listed below
- R package to access DoRothEA's regulons☆144Updated last year
- Prize-Collecting Steiner Forests for Interactomes☆59Updated 10 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆143Updated this week
- Python biomart API☆65Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆82Updated 3 years ago
- ☆32Updated 3 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆119Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆115Updated this week
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- coding exercise using TCGA immune infiltration data☆45Updated last year
- MOODS: Motif Occurrence Detection Suite☆97Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Parsing tools for GTF (gene transfer format) files☆119Updated 2 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆226Updated last week
- Tools for working with BUS files☆98Updated last week
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- predicting expression effects of human genome variants ab initio from sequence☆127Updated 3 months ago
- Porting DESeq2 into python via rpy2☆68Updated last year
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- code to run sei and obtain sei and sequence class predictions☆102Updated 2 years ago
- ☆64Updated last year
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆89Updated 3 months ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆135Updated 11 months ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆128Updated last year
- Alternative splicing resource☆55Updated 7 years ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆41Updated 3 weeks ago
- ☆80Updated 5 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated last month