churchmanlab / genewalkLinks
GeneWalk identifies relevant gene functions for a biological context using network representation learning
☆132Updated last year
Alternatives and similar repositories for genewalk
Users that are interested in genewalk are comparing it to the libraries listed below
Sorting:
- Python biomart API☆69Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆152Updated this week
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Prize-Collecting Steiner Forests for Interactomes☆62Updated last year
- What you need to process the Quarterly DepMap-Omics releases from Terra☆124Updated last month
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 5 months ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆44Updated 2 months ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆95Updated 9 months ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆60Updated last year
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆174Updated this week
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- ☆83Updated 10 months ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 8 months ago
- bioinformatics plotting and tools☆59Updated last year
- machine-readable file format for genomic library sequence and structure☆123Updated last month
- R package to access DoRothEA's regulons☆152Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated last week
- Tabula Muris Senis☆107Updated 2 years ago
- A continually expanding collection of cancer genomics notes and data☆108Updated 2 weeks ago
- Tools for working with BUS files☆102Updated 5 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆121Updated 3 weeks ago
- Functional Associations using Variational Autoencoders☆40Updated 3 weeks ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated 2 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 weeks ago
- ☆33Updated 4 years ago
- Unified knowledge-driven network inference from omics data☆85Updated last week