fnaumenko / isChIP
Fast realistic ChIP-seq simulator
☆8Updated last month
Alternatives and similar repositories for isChIP:
Users that are interested in isChIP are comparing it to the libraries listed below
- Simulation tool for ChIP- and other -seq experiments☆14Updated 2 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated this week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Updated 2 years ago
- Third-generation fusion gene detection☆14Updated last year
- ☆51Updated 5 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 9 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 10 months ago
- Master of Pores 2☆23Updated 4 months ago
- Human mitochondrial variants annotation using HmtVar.☆17Updated last year
- ☆22Updated 4 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆14Updated last year
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Automated Detection and Qualification of Differential Methylation☆13Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 10 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated 2 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Evaluation of phasing performance☆22Updated 7 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 7 months ago