fmfi-compbio / ospreyLinks
Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.
☆15Updated 4 years ago
Alternatives and similar repositories for osprey
Users that are interested in osprey are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆32Updated 2 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 9 months ago
- k-mer similarity analysis pipeline☆23Updated last month
- ☆19Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- SWORD - a highly efficient protein database search☆26Updated last year
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 7 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last month
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 10 months ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- An RNA virus strain-level identification tool for short reads.☆23Updated last year
- A library and tool for accessing remote BLOW5 files.☆24Updated 2 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month