kulikovv / dognet
A Deep Architecture for Synapse Detection in Multiplexed Fluorescence Images
☆14Updated 5 years ago
Related projects: ⓘ
- Analysis of results of the Data Science Bowl 2018☆20Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆26Updated last week
- Starter code for the CellSignal NeurIPS 2019 competition.☆45Updated last month
- Deep learning of an embedding mapping using t-SNE as a loss function on top of a 3-hidden-layer neural network. Use pytorch !☆21Updated 7 years ago
- This code accompanies "Differentiable probabilistic models of scientific imaging with the Fourier slice theorem", UAI 2019☆35Updated 5 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 11 years ago
- A visualization library for PyTorch tensors☆19Updated last year
- Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…☆10Updated 4 years ago
- 3D Roto-translation equivariant convolutions☆55Updated 5 years ago
- Integrated Cell project implemented in pytorch☆43Updated last year
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- U-net based segmentation of nuclei in microscopy images☆50Updated 6 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆40Updated 5 months ago
- Repository for my research on generative modelling of cell images☆13Updated last year
- Notebooks for VoidSeg☆16Updated 4 years ago
- A library to facilitate machine learning on multi-dimensional images.☆74Updated 2 weeks ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆49Updated last year
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated last year
- Axon/Myelin segmentation using Deep Learning☆114Updated last week
- ☆45Updated 6 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Updated 6 years ago
- AICS ML Segmentation (One-Way) Mirror☆26Updated 3 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 2 years ago
- Deep Learning-Based Point-Scanning Super-Resolution (PSSR)☆81Updated 3 months ago
- ☆16Updated last year
- Automatic ROI Detection☆19Updated 8 years ago
- BoxNet implemented in TensorFlow and all current training data☆31Updated 5 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 5 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆30Updated last year
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago