fastlmm / bed-readerLinks
A library for easy, fast, and efficient reading & writing of PLINK Bed files
☆80Updated 3 months ago
Alternatives and similar repositories for bed-reader
Users that are interested in bed-reader are comparing it to the libraries listed below
Sorting:
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆127Updated 4 years ago
- ☆51Updated 2 years ago
- A library of common biomedical types.☆37Updated 3 months ago
- Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance cal…☆107Updated 2 years ago
- Simple and transparent support for compressed files.☆76Updated 5 months ago
- bgzip support for Rust☆16Updated last year
- Efficient querying of biological databases☆39Updated 3 weeks ago
- Rust implementation of a fast, easy, interval tree library nim-lapper☆63Updated 2 weeks ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆66Updated 3 months ago
- Parallel Construction of Suffix Arrays in Rust☆24Updated 2 months ago
- Alignment-based gene expression quantification☆29Updated 3 months ago
- ☆14Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆37Updated 2 weeks ago
- FASTA and FASTQ parsing in Rust☆79Updated 4 months ago
- A server implementation of the htsget protocol for bioinformatics in Rust☆45Updated 2 months ago
- A very fast interval tree data structure☆123Updated 5 months ago
- Rust crates for working with Workflow Description Language (WDL) documents.☆55Updated this week
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- Simple succinct data structures (in Rust)☆50Updated 7 months ago
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- Rust utility code☆33Updated last year
- Rust implmentation of VCF parser☆23Updated 2 years ago
- data embedding based on approximate nearest neighbour☆36Updated last month
- ☆11Updated 3 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆20Updated 2 months ago
- A high efficiency binary format for sequencing data☆63Updated 2 weeks ago
- Bioinformatics Algorithms implemented in Rust for Learners☆32Updated 3 years ago
- PtrHash minimal perfect hash function, based of PTHash☆64Updated last month
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Updated last month
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year