Exon is an OLAP query engine specifically for biology and life science applications.
☆71Mar 26, 2025Updated last year
Alternatives and similar repositories for exon
Users that are interested in exon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆196Mar 10, 2025Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Updated this week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆32Updated this week
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆22Updated this week
- DuckDB Extension for working with bioinformatic data.☆19Oct 18, 2023Updated 2 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆10Nov 22, 2024Updated last year
- protein utilities in Rust☆34Updated this week
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆196Updated this week
- ☆35Updated this week
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 5 months ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Simple and transparent support for compressed files.☆81Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 8 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆16Feb 22, 2026Updated 6 months ago
- A port of biocommons/hgvs to the Rust programming language☆18Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- A Python interface to proteomics data repositories☆39Jun 19, 2025Updated last year
- Alignment-based filtering CLI tool☆62Oct 31, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A server implementation of the htsget protocol for bioinformatics in Rust☆50Aug 3, 2026Updated last month
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆51Updated this week
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated 3 weeks ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- Bioinformatics I/O libraries in Rust☆720Updated this week
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- an API for intersections of genomic data☆149Mar 12, 2026Updated 5 months ago
- ☆23Jan 23, 2022Updated 4 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Bad link reporter for GitHub repositories☆13Aug 3, 2026Updated last month
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated last year
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 2 months ago