Alternatives and similar repositories for fcsparser

Users that are interested in fcsparser are comparing it to the libraries listed below

• eyurtsev / FlowCytometryTools
  A python package for visualization and analysis of high-throughput flow cytometry data
  ☆121Updated last year
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆48Updated last month
• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆195Updated this week
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆64Updated last year
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆52Updated last week
• whitews / FlowKit
  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
  ☆179Updated last week
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆41Updated 5 months ago
• Hatchin / FlowSOM
  FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
  ☆33Updated 3 years ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆99Updated last month
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆234Updated last week
• taborlab / FlowCal
  Python Flow Cytometry Calibration Library
  ☆51Updated 2 months ago
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆138Updated 4 years ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated 2 years ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆85Updated 4 years ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆74Updated 2 years ago
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆198Updated 4 months ago
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆90Updated 5 months ago
• Teichlab / SpatialDE
  Test genes for Spatial Variation
  ☆172Updated last year
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆91Updated 4 months ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆104Updated last week
• sebriois / biomart
  Python biomart API
  ☆65Updated 2 years ago
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆50Updated last year
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆144Updated 6 months ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆116Updated this week
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆105Updated last week
• single-cell-data / TileDB-SOMA
  Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
  ☆107Updated this week
• calico / solo
  software to detect doublets
  ☆93Updated 6 months ago
• DC-analysis / fcswrite
  Python package for writing flow cytometry standard (.fcs) files
  ☆11Updated 3 months ago
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆137Updated last week