Alternatives and similar repositories for fcsparser

Users that are interested in fcsparser are comparing it to the libraries listed below

• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆206Updated 3 weeks ago
• eyurtsev / FlowCytometryTools
  A python package for visualization and analysis of high-throughput flow cytometry data
  ☆122Updated 2 years ago
• burtonrj / CytoPy
  A data-centric flow/mass cytometry automated analysis framework
  ☆43Updated 9 months ago
• whitews / FlowKit
  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
  ☆190Updated 4 months ago
• single-cell-data / TileDB-SOMA
  Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
  ☆115Updated this week
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆54Updated 5 months ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆55Updated last week
• taborlab / FlowCal
  Python Flow Cytometry Calibration Library
  ☆52Updated 6 months ago
• NygenAnalytics / CyteType
  Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format
  ☆46Updated last month
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆109Updated last week
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆110Updated last week
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆97Updated this week
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated 2 years ago
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆65Updated last year
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆79Updated 4 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆61Updated last week
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆95Updated 9 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 5 months ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆49Updated this week
• laminlabs / lamindb
  A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, o…
  ☆200Updated this week
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• Hatchin / FlowSOM
  FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
  ☆33Updated 3 years ago
• pachterlab / kb_python
  A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
  ☆174Updated last week
• jacoblevine / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆137Updated 5 years ago
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆147Updated 10 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆85Updated last week