sebriois / biomartLinks
Python biomart API
☆68Updated 2 years ago
Alternatives and similar repositories for biomart
Users that are interested in biomart are comparing it to the libraries listed below
Sorting:
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated last year
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆97Updated last year
- Tools for working with BUS files☆101Updated 3 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆95Updated last year
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆104Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- Python implementation of the Loom file format - http://loompy.org☆146Updated 9 months ago
- integrated RNA-seq Analysis Pipeline☆83Updated 6 years ago
- machine-readable file format for genomic library sequence and structure☆121Updated 2 weeks ago
- Downloader for ENCODE☆32Updated 4 years ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆140Updated last year
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated this week
- MyGene.info: A BioThings API for gene annotations☆128Updated 2 weeks ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆48Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 10 months ago
- Alternative splicing resource☆56Updated 7 years ago
- A Python-based EGA download client☆107Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 3 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆78Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆126Updated 5 years ago