sebriois / biomartLinks
Python biomart API
☆66Updated 2 years ago
Alternatives and similar repositories for biomart
Users that are interested in biomart are comparing it to the libraries listed below
Sorting:
- Parsing tools for GTF (gene transfer format) files☆121Updated 4 months ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated last month
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆95Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- MOODS: Motif Occurrence Detection Suite☆102Updated 2 years ago
- MyGene.info: A BioThings API for gene annotations☆126Updated last month
- Tools for working with BUS files☆100Updated last month
- A Python-based EGA download client☆101Updated 9 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- Pangolin is a deep-learning method for predicting splice site strengths.☆76Updated last year
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆140Updated last year
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆59Updated this week
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 2 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆115Updated last month
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 3 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆157Updated 10 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- python access to UCSC genomes database☆136Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated 11 months ago
- Python implementation of the Loom file format - http://loompy.org☆144Updated 7 months ago
- Library for manipulating genomic variants and predicting their effects☆84Updated last year
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago