Python biomart API
☆69Jun 17, 2023Updated 3 years ago
Alternatives and similar repositories for biomart
Users that are interested in biomart are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple pythonic interface to biomart.☆60Feb 6, 2020Updated 6 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆406Jul 8, 2026Updated last month
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Mar 5, 2018Updated 8 years ago
- Gene Set Enrichment Analysis in Python☆709Aug 5, 2026Updated 2 weeks ago
- pyAffy: Processing raw data from Affymetrix expression microarrays in Python.☆18Dec 6, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Library for KEGG pathway enrichment analysis☆19Jul 12, 2026Updated last month
- A Python package for gene network analysis☆33Jun 22, 2022Updated 4 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆27Apr 6, 2019Updated 7 years ago
- ☆15Nov 7, 2022Updated 3 years ago
- R package to evaluate reproducibility of Hi-C data☆10Mar 16, 2023Updated 3 years ago
- A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of …☆12May 5, 2021Updated 5 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Mar 12, 2018Updated 8 years ago
- Enabling differential allele-specific analysis☆12Dec 28, 2024Updated last year
- Tools used to analyze data from nanopore-based experiments.☆31Feb 1, 2015Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- Python library to access Gene Expression Omnibus Database (GEO)☆162Jul 27, 2024Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Jun 21, 2022Updated 4 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆165Aug 5, 2026Updated 2 weeks ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Python library to handle Gene Ontology (GO) terms☆905Aug 7, 2026Updated last week
- ☆14Feb 19, 2024Updated 2 years ago
- Snakemake-like pipeline manager for reproducible Jupyter Notebooks☆17Apr 13, 2026Updated 4 months ago
- Workflows written in common workflow language (CWL)☆14Dec 15, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Private, Modular, Publicly-Available Genome Interpretation Engine☆20Aug 3, 2016Updated 10 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆130Apr 12, 2020Updated 6 years ago
- ☆13Jan 18, 2017Updated 9 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- Access to Biological Web Services from Python.☆341Jun 12, 2026Updated 2 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Oct 6, 2021Updated 4 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A python extension for quick access to bigWig and bigBed files☆250Jul 22, 2026Updated 3 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆28Jul 18, 2024Updated 2 years ago
- Parsing tools for GTF (gene transfer format) files☆129Jul 8, 2026Updated last month
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- Interactive visualizations for differential expression☆25Dec 8, 2022Updated 3 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 5 years ago