sebriois / biomart
Python biomart API
☆63Updated last year
Related projects ⓘ
Alternatives and complementary repositories for biomart
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- Tools for working with BUS files☆92Updated last month
- A tool for bigWig files.☆118Updated 6 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆110Updated 11 months ago
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆106Updated this week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆39Updated last year
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆88Updated 3 months ago
- Parsing tools for GTF (gene transfer format) files☆110Updated 7 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆68Updated last year
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- A modular Hi-C mapping pipeline☆87Updated 11 months ago
- machine-readable file format for genomic library sequence and structure☆114Updated 2 weeks ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆74Updated last week
- ☆115Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- Pipeline for processing inDrops sequencing data☆73Updated 6 years ago
- MOODS: Motif Occurrence Detection Suite☆95Updated last year
- Porting DESeq2 into python via rpy2☆67Updated last year
- Downloader for ENCODE☆31Updated 4 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆101Updated 3 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆94Updated last week
- Unsorted scripts for bioinformatics☆59Updated 3 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆91Updated 9 months ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆64Updated last year
- Publication quality NGS track plotting☆108Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆67Updated 4 months ago