Alternatives and similar repositories for ideogram

Users that are interested in ideogram are comparing it to the libraries listed below

• dasmoth / dalliance
  Interactive web-based genome browser.
  ☆227Updated 5 years ago
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆191Updated this week
• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆249Updated last week
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆127Updated 5 years ago
• igvteam / igv.js
  Embeddable genomic visualization component based on the Integrative Genomics Viewer
  ☆683Updated this week
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆222Updated 3 years ago
• GMOD / jbrowse
  JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
  ☆471Updated 3 weeks ago
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆321Updated 4 months ago
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆304Updated last year
• broadinstitute / warp
  Warp Analysis Research Pipelines
  ☆214Updated this week
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆319Updated 3 years ago
• exomiser / Exomiser
  A Tool to Annotate and Prioritize Exome Variants
  ☆222Updated 3 weeks ago
• igvteam / igv-webapp
  IGV Web App
  ☆123Updated last week
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆495Updated last week
• statgen / locuszoom
  A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
  ☆161Updated 2 months ago
• biocommons / hgvs
  Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
  ☆272Updated 2 weeks ago
• broadinstitute / viral-ngs
  [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …
  ☆195Updated 10 months ago
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆345Updated 3 months ago
• pcingola / SnpEff
  ☆284Updated 5 months ago
• joiningdata / lollipops
  Lollipop-style mutation diagrams for annotating genetic variations.
  ☆191Updated 10 months ago
• ucscGenomeBrowser / kent
  UCSC Genome Browser source. "beta" is released version / "master" is testing.
  ☆239Updated last week
• higlass / higlass
  Fast, flexible and extensible genome browser.
  ☆329Updated last week
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆336Updated last month
• sigven / pcgr
  Personal Cancer Genome Reporter (PCGR)
  ☆268Updated 3 weeks ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆125Updated 5 years ago
• counsyl / hgvs
  HGVS variant name parsing and generation
  ☆175Updated 2 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆399Updated last week
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆263Updated 2 months ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆92Updated last week