Chromosome visualization for the web
☆311May 20, 2025Updated 10 months ago
Alternatives and similar repositories for ideogram
Users that are interested in ideogram are comparing it to the libraries listed below
Sorting:
- Resource of human chromosome schematics & images☆95Sep 4, 2024Updated last year
- Interactive in-browser track viewer☆280Oct 26, 2021Updated 4 years ago
- High performance WebGL genome visualization☆15Oct 22, 2021Updated 4 years ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- ☆124Aug 1, 2025Updated 7 months ago
- Population-scale genotyping using pangenome graphs☆196Jan 9, 2025Updated last year
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Oct 29, 2023Updated 2 years ago
- R htmlwidget package for ideogram.js☆15Oct 26, 2022Updated 3 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Structural variation and indel detection by local assembly☆253Updated this week
- A genome browser designed for complex structural variants and long reads.☆298Jun 6, 2025Updated 9 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆362Jun 6, 2025Updated 9 months ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Jul 24, 2017Updated 8 years ago
- A list of interesting genome browser and genome visualization programs☆1,052Mar 3, 2026Updated 2 weeks ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆712Mar 12, 2026Updated last week
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Efficient pythonic random access to fasta subsequences☆482Sep 3, 2025Updated 6 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆867Jul 10, 2024Updated last year
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆128Sep 3, 2019Updated 6 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated last month
- The next version of bwa-mem☆823Oct 15, 2025Updated 5 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- The script presents a simple way to visualize features on human chromosome ideograms☆43May 2, 2025Updated 10 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- An extensible python-based genomics visualization engine☆144Aug 11, 2023Updated 2 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- BEDOPS: high-performance genomic feature operations☆364Apr 29, 2025Updated 10 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆338Feb 22, 2026Updated 3 weeks ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 9 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 6 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month