Alternatives and similar repositories for ideogram

Users that are interested in ideogram are comparing it to the libraries listed below

• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆271Updated this week
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆200Updated this week
• dasmoth / dalliance
  Interactive web-based genome browser.
  ☆228Updated 6 years ago
• ucscGenomeBrowser / kent
  UCSC Genome Browser source. "beta" is released version / "master" is testing.
  ☆250Updated last week
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 3 years ago
• statgen / locuszoom
  A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
  ☆163Updated 8 months ago
• veg / phylotree.js
  Interactive viewer of phylogenetic trees
  ☆193Updated last week
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆131Updated 5 years ago
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆328Updated 10 months ago
• broadinstitute / warp
  Warp Analysis Research Pipelines
  ☆224Updated last week
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆313Updated this week
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆224Updated 3 years ago
• counsyl / hgvs
  HGVS variant name parsing and generation
  ☆176Updated 2 years ago
• igvteam / igv-webapp
  IGV Web App
  ☆127Updated 2 weeks ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆493Updated this week
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆190Updated last year
• igvteam / igv.js
  Embeddable genomic visualization component based on the Integrative Genomics Viewer
  ☆706Updated 2 weeks ago
• higlass / higlass
  Fast, flexible and extensible genome browser.
  ☆338Updated 3 weeks ago
• The-Sequence-Ontology / Specifications
  GFF and GVF specification documents
  ☆219Updated last year
• arq5x / gemini
  a lightweight db framework for exploring genetic variation.
  ☆323Updated 5 years ago
• sigven / pcgr
  Personal Cancer Genome Reporter (PCGR)
  ☆274Updated 3 months ago
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆357Updated 9 months ago
• MariaNattestad / Ribbon
  A genome browser designed for complex structural variants and long reads.
  ☆296Updated 7 months ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆202Updated 3 weeks ago
• DECIPHER-genomics / Genoverse
  HTML5 scrollable genome browser
  ☆111Updated 2 years ago
• biocommons / hgvs
  Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…
  ☆287Updated last month
• pcingola / SnpEff
  ☆301Updated this week
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated 2 weeks ago
• GangCaoLab / CoolBox
  Jupyter notebook based genomic data visualization toolkit.
  ☆249Updated last month
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆525Updated 3 weeks ago