Alternatives and similar repositories for ideogram

Users that are interested in ideogram are comparing it to the libraries listed below

• GMOD / jbrowse-components
  Source code for JBrowse 2, a modern React-based genome browser
  ☆246Updated this week
• dasmoth / dalliance
  Interactive web-based genome browser.
  ☆227Updated 5 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• broadinstitute / seqr
  web-based analysis tool for rare disease genomics
  ☆189Updated this week
• ucscGenomeBrowser / kent
  UCSC Genome Browser source tree. Stable branch: "beta".
  ☆238Updated last week
• bedops / bedops
  BEDOPS: high-performance genomic feature operations
  ☆343Updated 2 months ago
• macarthur-lab / gene_lists
  List of gene lists for genomic analyses.
  ☆222Updated 3 years ago
• statgen / locuszoom
  A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
  ☆161Updated 2 months ago
• igvteam / igv-webapp
  IGV Web App
  ☆124Updated last week
• MariaNattestad / Ribbon
  A genome browser designed for complex structural variants and long reads.
  ☆285Updated last month
• veg / phylotree.js
  Interactive viewer of phylogenetic trees
  ☆181Updated 5 months ago
• broadinstitute / warp
  WDL Analysis Research Pipelines
  ☆213Updated this week
• brentp / vcfanno
  annotate a VCF with other VCFs/BEDs/tabixed files
  ☆379Updated 2 weeks ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆319Updated 3 years ago
• vgteam / sequenceTubeMap
  displays multiple genomic sequences in the form of a tube map
  ☆202Updated 3 weeks ago
• exomiser / Exomiser
  A Tool to Annotate and Prioritize Exome Variants
  ☆219Updated this week
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆301Updated last year
• WGLab / doc-ANNOVAR
  Documentation for the ANNOVAR software
  ☆242Updated 2 weeks ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆196Updated last week
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆256Updated 2 months ago
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆321Updated 4 months ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆202Updated 4 years ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆269Updated last month
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆127Updated 5 years ago
• dpryan79 / ChromosomeMappings
  This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
  ☆242Updated 2 years ago
• gosling-lang / gosling.js
  Grammar of Scalable Linked Interactive Nucleotide Graphics
  ☆177Updated 2 weeks ago
• broadinstitute / gnomad-browser
  Explore gnomAD datasets on the web
  ☆83Updated this week
• ncbi / blast_plus_docs
  ☆113Updated 2 years ago
• The-Sequence-Ontology / Specifications
  GFF and GVF specification documents
  ☆214Updated last year
• biocommons / hgvs
  Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
  ☆270Updated last month