eweitz / ideogram
Chromosome visualization for the web
☆299Updated last month
Alternatives and similar repositories for ideogram:
Users that are interested in ideogram are comparing it to the libraries listed below
- UCSC Genome Browser source tree. Stable branch: "beta".☆235Updated this week
- A genome browser designed for complex structural variants and long reads.☆282Updated 2 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆319Updated last month
- Simple oligo analysis and primer design☆176Updated 2 months ago
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 9 months ago
- Performant Pythonic GenomicRanges☆468Updated last month
- Source code for JBrowse 2, a modern React-based genome browser☆235Updated this week
- ☆272Updated 3 months ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Fast, flexible and extensible genome browser.☆322Updated last week
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆363Updated 4 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆463Updated 2 weeks ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆386Updated 5 months ago
- A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.☆160Updated this week
- Genome-scale protein function classification☆323Updated last week
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆326Updated 2 months ago
- Interactive web-based genome browser.☆227Updated 5 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆375Updated last year
- Viral genomics analysis pipelines☆193Updated 7 months ago
- C++ API & command-line toolkit for working with BAM data☆424Updated 9 months ago
- BEDOPS: high-performance genomic feature operations☆331Updated last week
- Bayesian haplotype-based mutation calling☆312Updated 2 months ago
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 3 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆125Updated 5 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆196Updated 3 weeks ago
- Haplotype VCF comparison tools☆428Updated last year
- TransDecoder source☆288Updated 7 months ago
- Java utilities for Bioinformatics☆498Updated this week
- Tools to process and analyze deep sequencing data.☆720Updated last week
- GFF and GTF file manipulation and interconversion☆299Updated last year