Alternatives and similar repositories for minis

Users that are interested in minis are comparing it to the libraries listed below

• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆16Updated last month
• petersaj / AP_histology
  Histology processing
  ☆64Updated 3 weeks ago
• talialerner / Photometry-Analysis-Shared
  ☆11Updated 8 years ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 7 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• Whitlock-Group / HERBS
  ☆51Updated 8 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated last month
• zhuangjun1981 / WarpedVisualStim
  For displaying spherically corrected visual stimulus on a flat screen.
  ☆9Updated 4 months ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆34Updated last month
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 5 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 9 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆87Updated 6 months ago
• LernerLab / GuPPy
  Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
  ☆74Updated 2 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆134Updated last year
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆26Updated last month
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 6 years ago
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆18Updated 7 years ago
• JingyiGF / HERBS
  ☆19Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 8 months ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆39Updated 3 years ago
• agordonfennell / OHRBETS
  An open-source ecosystem of hardware and software for head-fixed behavior
  ☆11Updated 2 weeks ago
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 2 years ago
• AllenInstitute / neuron_morphology
  Tools for working with single-neuron morphological reconstructions
  ☆21Updated last year
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆53Updated last month
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago