drorlab / gvp
Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
☆134Updated 3 years ago
Alternatives and similar repositories for gvp:
Users that are interested in gvp are comparing it to the libraries listed below
- ☆200Updated last year
- ☆128Updated 2 years ago
- ☆105Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆268Updated 2 years ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆106Updated 4 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆202Updated last year
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆237Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Database of Interacting Protein Structures (DIPS)☆98Updated last year
- ☆177Updated 6 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆112Updated 3 months ago
- ☆121Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆231Updated last week
- ☆83Updated 5 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 5 months ago
- Masif seed paper repository☆146Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆91Updated last month
- Comprehensive benchmarking of protein-ligand structure prediction methods (ICML 2024 AI4Science)☆136Updated 2 weeks ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆102Updated 3 weeks ago
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆106Updated last year
- Protein-ligand structure prediction☆212Updated 7 months ago
- open source repository☆136Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆86Updated last year
- Protein structure datasets for machine learning.☆106Updated 8 months ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆173Updated last week
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆103Updated this week
- Antibody-Antigen Docking and Affinity Benchmark☆70Updated 4 years ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆228Updated 10 months ago
- Diffusion model based protein-ligand flexible docking method☆101Updated 4 months ago