Alternatives and similar repositories for gvp

Users that are interested in gvp are comparing it to the libraries listed below

• drorlab / gvp-pytorch
  Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆279Updated 2 years ago
• wengong-jin / RefineGNN
  ☆130Updated 2 years ago
• FreyrS / dMaSIF
  ☆209Updated 2 years ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆240Updated last year
• BytedProtein / ByProt
  ☆187Updated 8 months ago
• jertubiana / ScanNet
  ☆126Updated last year
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆206Updated last year
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆100Updated last year
• a-r-j / ProteinWorkshop
  Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …
  ☆239Updated last month
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆122Updated last month
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆122Updated 6 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆106Updated last month
• luwei0917 / TankBind
  Open source code for TankBind. Galixir Tenchnologies
  ☆154Updated last year
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆277Updated 4 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆100Updated 8 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆154Updated last year
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆322Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆100Updated last year
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆149Updated 7 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆121Updated 2 years ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆198Updated 3 months ago
• BioinfoMachineLearning / PoseBench
  Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)
  ☆158Updated 2 months ago
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆215Updated 10 months ago
• divelab / GraphBP
  Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]
  ☆108Updated last year
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆108Updated 3 months ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆137Updated last year
• pengxingang / Pocket2Mol
  Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets
  ☆309Updated last year
• wengong-jin / DSMBind
  ☆89Updated 7 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆182Updated last month