Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
☆164May 1, 2021Updated 5 years ago
Alternatives and similar repositories for gvp
Users that are interested in gvp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆326Nov 15, 2025Updated 9 months ago
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago
- Open source code for TankBind. Galixir Tenchnologies☆188Nov 1, 2023Updated 2 years ago
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆260Sep 22, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆255May 22, 2023Updated 3 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 4 years ago
- ☆133Sep 5, 2022Updated 3 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆330Jun 13, 2025Updated last year
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆76Jun 8, 2021Updated 5 years ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆546Feb 19, 2025Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- OmegaFold Release Code☆627Dec 12, 2022Updated 3 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆62Aug 3, 2024Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.☆90Jun 18, 2021Updated 5 years ago
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆584Apr 3, 2026Updated 4 months ago
- An all-atom protein structure dataset for machine learning.☆366Mar 16, 2024Updated 2 years ago
- ☆110Apr 1, 2023Updated 3 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆140Apr 23, 2026Updated 4 months ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Protein Design with Guided Discrete Diffusion☆144Feb 21, 2024Updated 2 years ago
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- ☆137Sep 14, 2022Updated 3 years ago
- Code for the ProteinMPNN paper☆1,835Aug 14, 2024Updated 2 years ago
- ☆818May 18, 2026Updated 3 months ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆153Mar 10, 2025Updated last year
- ☆13Jul 14, 2023Updated 3 years ago
- Database of Interacting Protein Structures (DIPS)☆106Jan 26, 2024Updated 2 years ago
- Implementation of Torsional Diffusion for Molecular Conformer Generation (NeurIPS 2022)☆289Feb 10, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆240Dec 29, 2023Updated 2 years ago
- open source repository☆149Nov 30, 2023Updated 2 years ago
- ☆218Sep 24, 2024Updated last year
- ☆64Sep 14, 2023Updated 2 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆74May 20, 2026Updated 3 months ago
- ☆101Feb 14, 2024Updated 2 years ago