drorlab / gvp
Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
☆132Updated 3 years ago
Alternatives and similar repositories for gvp:
Users that are interested in gvp are comparing it to the libraries listed below
- ☆198Updated last year
- ☆126Updated 2 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆259Updated 2 years ago
- ☆105Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆100Updated 3 months ago
- ☆119Updated last year
- Database of Interacting Protein Structures (DIPS)☆96Updated last year
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆236Updated last year
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆197Updated last year
- ☆172Updated 4 months ago
- ☆81Updated 4 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆96Updated 4 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆108Updated last month
- Masif seed paper repository☆143Updated last year
- Protein structure datasets for machine learning.☆105Updated 7 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods (ICML 2024 AI4Science)☆128Updated this week
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆100Updated 10 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆48Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆90Updated last week
- Open source code for TankBind. Galixir Tenchnologies☆153Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆221Updated 10 months ago
- open source repository☆135Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆83Updated last year
- Generative Language Modeling for Antibody Design☆138Updated 4 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆169Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆69Updated 4 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆86Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆71Updated last year
- Protein-ligand structure prediction☆210Updated 6 months ago